Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f22
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   0.80 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.5  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 333 TPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGS 437
           TP+ H  +Y G +  P P+   R +    L V+GS
Sbjct: 32  TPVIHFLQYPGCVPKPIPSYACRGRCSSYLQVSGS 66


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -2

Query: 464 VRCQNCVAC*AGNAQRESNLHPC 396
           V  Q C  C  G  + E+  H C
Sbjct: 257 VEKQECTECPIGKFKHEAGSHSC 279


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 15  SLASTVVLTHIS*NYVTRKYCNKMWK 92
           ++AS   ++ ++ +Y    Y N+ WK
Sbjct: 68  TIASFDAISEVNMDYTITMYLNQYWK 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,642
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)