Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14f21
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 28 0.76
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 2.3
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 2.3
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 26 3.1
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 3.1
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 25 5.4
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 25 5.4
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 5.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 7.1
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 9.4
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 25 9.4
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.4
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 9.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 9.4
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 25 9.4
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 28.3 bits (60), Expect = 0.76
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 413 IRSPLKHLKYNNCIWVCRFYMLH*NVLSKFD 505
+R+ +K LKY + VCR + L N+L +D
Sbjct: 679 VRTYIKALKYGDAFKVCRTHRLDLNILFDYD 709
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 524 FMSFLSHRIY*VHFNATYKTYKPK 453
F SFL+ ++ HF+ T++ Y+PK
Sbjct: 39 FGSFLADDLFGKHFDETFEIYQPK 62
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = -1
Query: 303 FLHSILAVFESVFHDELSQADAPDQHIARPIDLRNVKIEQYPVSF*HLVQHGHGVVIDKI 124
F+ + +A + + L + +APD+ + +++ + +E V+ + HG++I KI
Sbjct: 253 FISTAVADYTNKILSLLKKEEAPDELTQKLLEVLGLLLEYQQVNILKIWPELHGLLISKI 312
Query: 123 PLVPQEIA 100
P I+
Sbjct: 313 SYDPNLIS 320
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 52 VFVKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFD 198
V +K+++ ++ L Y Y + + + + + +LNQ S D +L F+
Sbjct: 621 VLLKLWDVLFTNYLSYDYHIFVAYAIAERHREVLLNQTSAFDEVLKYFN 669
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 226 MLIWCIGLRKFIVKDGLKDSEYGMKK 303
M+I C+G IV D ++ S + MKK
Sbjct: 120 MIIECVGWNGMIVSDKMRKSVFHMKK 145
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 7 CQRVMKKTHAKSIKYVFVKMYEK---IYKMSLLYGYFLRN-QWNLVD 135
C + K +K I ++ ++K ++ LLYGY+ RN + N +D
Sbjct: 94 CPHQVGKPISKGINSGRIQFFDKHLSMFPQDLLYGYYTRNRESNTID 140
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 366 RKYDSKEQRIKTNVSYLQPSLFLHSILAVFES 271
R Y K+ +I+ ++YL P LF+H ++ ES
Sbjct: 103 RVYKKKKGKIE-ELNYLPPVLFIHGLMMNSES 133
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 229 LIWCIGLRKFIVKDGLKDSEYGMKKQRWLKIAHIS 333
LI +G+R+ D D+++ K Q+ LK H+S
Sbjct: 259 LIRLLGIRRVFENDPEIDAQFTTKSQQLLKSYHLS 293
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 34 AKSIKYVFVKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRIL-FNFDISKI 210
+K + + + IY+ ++Y + +N+W + D + N S+ D + ISK+
Sbjct: 648 SKGVPLLVRNVLLSIYENKIIYFDWKKNRWEVNYDEMYTLDNDYSEPDAFMTAKKKISKL 707
Query: 211 -DWPRYMLIW 237
D R +L W
Sbjct: 708 NDSSRAILGW 717
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 371 NKENTTPKNSV*KLM*AIFSHLCFFI 294
NK+N TP N++ + A SH F+I
Sbjct: 76 NKKNVTPNNNIRQKNTATSSHPSFYI 101
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 78 IQNVFVVRLFPEEPVESCR*QHRGH 152
I ++V+ FP EPV+ H GH
Sbjct: 25 IHEQYLVKAFPNEPVDYEGRMHAGH 49
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 197 SKLNNILSVFDIWFSMATVLSSTRFHWFLRK*PYNKDILYIF 72
SK++N LSV +S + V ++ R+ KD+L++F
Sbjct: 127 SKIHNQLSVCHDEYSTSIVSPEVAMNYLQRRQSGMKDLLFVF 168
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 91 LLYGYFLRNQWNLVDDNTVAMLNQ 162
+ Y Y+ +NQW L+DD T+ + +
Sbjct: 397 IAYTYY-QNQWFLLDDTTIVEVKE 419
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/53 (15%), Positives = 28/53 (52%)
Frame = -2
Query: 203 EMSKLNNILSVFDIWFSMATVLSSTRFHWFLRK*PYNKDILYIFSYILTNTYF 45
+ +++ N ++ +W + + T ++ P+N++ L++ ++ + N Y+
Sbjct: 335 DQARIMNAITFVMMWDGIPIIYYGTEQNFNSYHDPFNREALWLSNFDMENVYY 387
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 277 KDSE-YGMKKQRWLKIAHISFYTLFFG 354
KD E YG +W K H + + FFG
Sbjct: 175 KDEEPYGKLNPKWTKWFHRNLFPCFFG 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,468
Number of Sequences: 5004
Number of extensions: 50754
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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