Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f18
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...   152   5e-38
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    29   0.62 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.9  
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28...    27   2.5  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    26   4.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   4.4  

>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  152 bits (368), Expect = 5e-38
 Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 3/200 (1%)
 Frame = +2

Query: 47  KYKEKDETFLEKHLVSKEPFGQFKSWFEEACARKEILEPNAMCLATVS-QEGFPSARFVL 223
           +Y+ +  +     L+ K+P   F  WF+EA   + I  P +  L+T     G  S+R VL
Sbjct: 18  RYQYEKSSLHRDALMGKDPLVLFNQWFQEATDDEGIKSPESTTLSTARLPSGRVSSRLVL 77

Query: 224 CKGYGKEGFKFYTNYG-SKKAKDIEGNPNVAATFYWEILNRSVRIEGRVEKLSEDDSTKY 400
            K     GF  +TN G SKKAKD++ NP  + +F+WE L R VR+EG +E+LS +++ +Y
Sbjct: 78  LKELDHRGFIIFTNLGTSKKAKDLKSNPYASLSFWWEPLQRQVRVEGIIERLSREETEEY 137

Query: 401 FHTRPVVSQIAACASYQSTPIESRDVLCEREKLLEQQY-MIPGKEVPKPSYWGGYLLIPR 577
           F TRP  S+I A AS QS  I  R+ L +R +  ++++       VP P +WGG  ++P 
Sbjct: 138 FKTRPRNSRIGAWASPQSEVIADREELEKRVEEYKKKFGEDESVPVPVPDFWGGIRIVPL 197

Query: 578 SVEFWQGQRDRLHDRIKFRR 637
            +EFWQG + RLHDR  FRR
Sbjct: 198 EIEFWQGGKYRLHDRFSFRR 217


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 620 DHEAGPSDLARIRQTLELRDILPSSLVSELLYQVSYIAVQE 498
           D +A PS  ARI +  EL D L    +SEL+  V+   ++E
Sbjct: 37  DEDADPSRTARIDRIAELLDGLNDEQISELVNGVNSTTIKE 77


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 637 SSEFDAIMKPVPLTLPEFDRPWN*EISSPVAWFRNFFTR 521
           SS+    +  V   LPEF  P + +I   ++W   FF+R
Sbjct: 50  SSDGSVQIDTVRAVLPEFQFPSHPQIGDCLSWIETFFSR 88


>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 YGSKKAKDIEGNPNVAATFYWEILNRSVRI-EGRVEKLSED 385
           YG+KK + ++ NP++      E++NR+ RI E R EK  E+
Sbjct: 28  YGNKKVRSLKMNPDMWEKH--EVINRAWRIHEYRQEKQREN 66


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 515 MIPGKEVPKPSYWGGYLLIPRSVE 586
           MIPG+E P  +Y G  +L P ++E
Sbjct: 43  MIPGEERPNVNYGGKVILPPSALE 66


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 517 HILLFKKLFSFTQNISGLYW 458
           H+L FK LF F+ N+    W
Sbjct: 171 HLLFFKSLFKFSTNLVKFQW 190


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 172 VSSYSFTGRFSISSVCFVQGLW*RRIQILHKLWK 273
           VS +S    FS+ SVC V GL+   +Q  ++ WK
Sbjct: 418 VSHFSLYNAFSVFSVCGVFGLY--YLQSSYRSWK 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,713
Number of Sequences: 5004
Number of extensions: 61851
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)