Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f18
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           25   0.88 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           25   0.88 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.2  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 579 LSNSGKVRGTGFMIASNS 632
           +SNS +VRG G  I SNS
Sbjct: 23  VSNSDRVRGNGNAIVSNS 40


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 579 LSNSGKVRGTGFMIASNS 632
           +SNS +VRG G  I SNS
Sbjct: 24  VSNSDRVRGNGNAIVSNS 41


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 445 LPKYSNRVQRCSV*KRKAS*TAIYDTW*RSSETKLLGRISLNSKVCRIL 591
           LP  S R  RCSV    AS    ++ W  S  TK+     LN+  C  L
Sbjct: 9   LPVKSFRESRCSVRCSAASGLRWFEIWRDSLPTKMR---ELNATACAAL 54


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 473 LWTLLEYFGSLHMQQSG*LLVVYENIL*NHLLKVFLL 363
           L ++L Y   LH+     +  V E++L + + +VFL+
Sbjct: 323 LTSILRYLQELHVDAPTWISSVTESVLKSKIGQVFLI 359


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 640 GSSEFDAIMKPVPLTLP 590
           G+ +FD I+K + +T+P
Sbjct: 82  GNFDFDMIVKQLEITMP 98


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 356 EGRVEKLSEDDSTKYFHTRP 415
           E  V ++S+D S+ +FH  P
Sbjct: 616 EPTVGEISQDGSSPHFHQSP 635


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,004
Number of Sequences: 438
Number of extensions: 4328
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)