Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14f16
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 29 0.34
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 27 2.4
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 4.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 5.6
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 7.3
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 7.3
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 25 7.3
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 9.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.7
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 25 9.7
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 29.5 bits (63), Expect = 0.34
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 192 VTPDPGSLPLLSQTPSLVVKCDQEGDNTCKILCNALATATKAKGPEILCSRLKDVNELKL 371
V PD SL L + L+ D+E DN K++ + A+ IL + DV
Sbjct: 267 VFPDAESLKLAASR--LLALADREADNNAKLIMLDRISQLAARDKSILEDLITDVIPFLS 324
Query: 372 SAFYKTCDK 398
S+ + C+K
Sbjct: 325 SSDFDVCEK 333
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 368 AFSFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVG 475
A FLQ++ +T+EL+K + + FP +S F+G
Sbjct: 131 AQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIG 166
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 215 QTSRIWRHSRKSSARAVAFPVFEWG--DTNWYNFS 117
+TS IW R++ AR A + W D+ WY+++
Sbjct: 505 ETSAIW--DRRARARRAAMEKYLWSEADSMWYDYN 537
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 103 LIPTNMRMQMSQKYTLKEPILCSFSMLNE 17
LI + M + S+KYT P++ +++ L+E
Sbjct: 1192 LITSRMSVDFSEKYTQLIPVITTYTHLSE 1220
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 21 FNIENEHKMGSLRVY--FCDICILMLVGINYFLL 116
F I++E ++GS+ + C + +L L+G +FL+
Sbjct: 243 FAIKSEGELGSVFLISLICSVLVLCLLGYEFFLV 276
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 160 FRSSNGAILTGTTSASRK*LIPTNMRMQMSQKYTLK 53
F+ NG TG+TS +R + + + +KY+ +
Sbjct: 104 FQGENGEAKTGSTSLTRSASATVSRKSSLQEKYSTR 139
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 51 SLRVYFCDICILMLVGINYFLLAEVV 128
SL +FC +C++ +G + LAE +
Sbjct: 89 SLITFFCKLCVIFGLGFVFTYLAEQI 114
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 202 SGVTVGNPPQEQLPFRSSNGAILTGTTSASRK 107
+G T +PP + F +G I+TG S K
Sbjct: 199 AGATFIDPPNPNVNFTQIDGKIVTGVNPQSAK 230
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 420 TAEAPLCCENSQVKVCS 470
T+E P CC N + VC+
Sbjct: 281 TSEKPSCCSNGKSTVCA 297
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 286 SILHVLSPS*SHLTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK 107
S + +L P+ + + ++ +SR SG V PPQ +LP SS + T +R
Sbjct: 167 SQIGILPPNLNSIGNKMFSLKSRVPSSSSGSFVAPPPQMRLPAYSSPQKSRSNTKDENRH 226
Query: 106 *LI 98
L+
Sbjct: 227 NLL 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,546
Number of Sequences: 5004
Number of extensions: 44588
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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