Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f09
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    31   0.36 
Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z74043-12|CAA98548.1|  503|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z74040-7|CAA98515.1|  503|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical...    27   5.8  
AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical ...    27   5.8  
AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival...    27   5.8  
AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical ...    27   5.8  
U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
 Frame = -1

Query: 378 SSVFFLEISAFLFCITTN*IYFMN---SALRAIKAASLSWCRWNQFRWVSLRVYSFFCKR 208
           SS+FF ++  FL+ +    + F N   ++L + +  +L +C+       S+    + C +
Sbjct: 368 SSLFFWKLLTFLYLLLQTIVIFPNYSKTSLLSFRECNL-YCQTTSLTIFSIFFLVYSCIQ 426

Query: 207 IDLFVDSLMFHFHIDSCKPVSFLLFL 130
             LFV  +++ F  ++   +S  LFL
Sbjct: 427 SSLFVGIVLWSFKSEAMFQISLNLFL 452


>Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical
           protein B0331.1 protein.
          Length = 499

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 409 SW*CSWNVXKNINLPQDVYKSVLNLF 486
           SW C WN+  N  + ++VYK ++++F
Sbjct: 319 SWLC-WNIAHNPEVQENVYKEIISIF 343


>Z74043-12|CAA98548.1|  503|Caenorhabditis elegans Hypothetical
           protein T19B10.1 protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 409 SW*CSWNVXKNINLPQDVYKSVLNLF 486
           SW C WN+  N N+ + VYK ++ +F
Sbjct: 320 SWAC-WNLAHNPNVQEKVYKEMIEVF 344


>Z74040-7|CAA98515.1|  503|Caenorhabditis elegans Hypothetical
           protein T19B10.1 protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 409 SW*CSWNVXKNINLPQDVYKSVLNLF 486
           SW C WN+  N N+ + VYK ++ +F
Sbjct: 320 SWAC-WNLAHNPNVQEKVYKEMIEVF 344


>Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical
           protein T06H11.1b protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -2

Query: 491 DVNKLSTDL*TSXGKLIFLXTFQEHYQDSSPKRCRVNEVVFFS*RYPHSCFA*LLIEYI 315
           ++N  S  L    G  +   T ++   D  PK C    V +     PH     +LI Y+
Sbjct: 98  NINSQSALLDADDGATVITDTIKDDQDDKEPKSCPQQTVKYIKILTPHVILVSVLIGYL 156


>Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical
           protein T06H11.1a protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -2

Query: 491 DVNKLSTDL*TSXGKLIFLXTFQEHYQDSSPKRCRVNEVVFFS*RYPHSCFA*LLIEYI 315
           ++N  S  L    G  +   T ++   D  PK C    V +     PH     +LI Y+
Sbjct: 136 NINSQSALLDADDGATVITDTIKDDQDDKEPKSCPQQTVKYIKILTPHVILVSVLIGYL 194


>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 114 LYTDQKGRGERRQVCKNQYGSETSSYRRTNQSVYKKNC 227
           LY D+ G+ E+++  + Q+  E   ++RT    Y+  C
Sbjct: 380 LYLDRTGQLEKQREKRKQWAEEGFGHKRTETDTYESLC 417


>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 149 TGLQESIWK*NIKLSTNKSIRLQKKLYTRRLTQRN 253
           T LQ S WK    ++TNK++  + + +TR+  +RN
Sbjct: 113 TALQNSSWK---IVNTNKNLECRARCHTRKSDRRN 144


>Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 183 MFHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFP 70
           +F   ID CKP SF+   S    +W   I ++   T P
Sbjct: 233 LFQRRIDGCKPRSFINNYSKMNNIWNSSIDINSTKTLP 270


>AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 183 MFHFHIDSCKPVSFLLFLSDQYKVWTKVIRLHF**TFP 70
           +F   ID CKP SF+   S    +W   I ++   T P
Sbjct: 233 LFQRRIDGCKPRSFINNYSKMNNIWNSSIDINSTKTLP 270


>AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical
           protein C23H5.11 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 375 SVFFLEISAFLFCITTN*IYFMNSALRAIKAASLSWCRWNQ 253
           ++F   IS    C T   +  +N   R  + +S+SW  W +
Sbjct: 100 ALFHFVISTLCLCFTIRLLLLLNCIRRCRRWSSVSWVAWQK 140


>AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival of
           motor neuron)protein interactor protein 1, isoform a
           protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
 Frame = +1

Query: 4   LIDLKLVKNSITHAKLLVKNCK--RKGLS---KMESNDFRPYFILI 126
           +IDL LV++ ++  + LVK C+  R  LS   K E+N+F  +  +I
Sbjct: 197 VIDLPLVQDVVSALRRLVKECRSLRSELSIDRKSEANEFSLFITII 242


>AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical
           protein F35F11.1 protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 204 DLFVDSLMFHFHIDSCKPVS 145
           D+F     FHFH+D  KPV+
Sbjct: 468 DIFTHIPAFHFHVDQDKPVA 487


>U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical
           protein F46H5.7b protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 7   IDLKLVKNSITHAKLLVKNCKRKGLSKMESNDFRPYFILIRKE-EEKGDRFARINMEVKH 183
           I +K  K+ ++ A+L VKN ++K L   +S D    F+ I  E +EK  +     +   H
Sbjct: 185 IRVKEYKSDLSAAQLKVKNLEKK-LESAQSADSEEKFVRIDSEIDEKRSQDHDEEINNLH 243

Query: 184 QAIDEQIN 207
             I+E  N
Sbjct: 244 NVIEELRN 251


>U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical
           protein F46H5.7a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 7   IDLKLVKNSITHAKLLVKNCKRKGLSKMESNDFRPYFILIRKE-EEKGDRFARINMEVKH 183
           I +K  K+ ++ A+L VKN ++K L   +S D    F+ I  E +EK  +     +   H
Sbjct: 185 IRVKEYKSDLSAAQLKVKNLEKK-LESAQSADSEEKFVRIDSEIDEKRSQDHDEEINNLH 243

Query: 184 QAIDEQIN 207
             I+E  N
Sbjct: 244 NVIEELRN 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,441,779
Number of Sequences: 27780
Number of extensions: 199844
Number of successful extensions: 534
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)