Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f09
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -3

Query: 88  FLINLSFCNF*LIIXRGLYYF 26
           F++NL+ C+F ++I   ++ +
Sbjct: 86  FVVNLAICDFFMMIKTPIFIY 106


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 207 IDLFVDSLMFHFHIDSCKPVSFLLFLSDQ 121
           + L V +L+  FHI    P S    LSD+
Sbjct: 81  VSLQVANLLRLFHIPQISPASTAKALSDK 109


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 207 IDLFVDSLMFHFHIDSCKPVSFLLFLSDQ 121
           + L V +L+  FHI    P S    LSD+
Sbjct: 171 VSLQVANLLRLFHIPQISPASTAKALSDK 199


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 319 IFYEQCFKSNKSSKPF 272
           IFYE+   S  S KPF
Sbjct: 576 IFYEKIETSLNSDKPF 591


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 319 IFYEQCFKSNKSSKPF 272
           IFYE+   S  S KPF
Sbjct: 576 IFYEKIETSLNSDKPF 591


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 162 NQYGSETSSYRRTNQSVYKK 221
           N Y +  ++Y   N + YKK
Sbjct: 332 NNYNNNYNNYNNNNYNNYKK 351


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 235 QTYPTKLIPAAPRKA 279
           Q YP  LIP   +KA
Sbjct: 40  QVYPENLIPRLAKKA 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,659
Number of Sequences: 438
Number of extensions: 2384
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)