Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f08
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.3  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   5.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   5.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   7.0  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 336 KAMAPMTKEEWEKKQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKERHKEINRQATQAD 512
           KA+    +EE  KK+   R   ++E  +  L +   E  E+   KER K++ +Q  +AD
Sbjct: 627 KALEAKRQEEARKKREEQRLKREQEKKQQELERQKRE--EKQKQKEREKKLKKQQQEAD 683


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 342 MAPMTKEEWEKKQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKERH 479
           M P++KE+      +I   +D  T  +RL     E +EE +   ++
Sbjct: 369 MQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKY 414


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 432 KGDGEVLEEIVSKERHKEINRQA 500
           K   EV+ EI++K +H +  RQA
Sbjct: 203 KSKREVMSEIIAKSKHYKAERQA 225


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 270 SQSRDKSPEVSADIPVELMEISKAMAPMTKEEWEKKQSI 386
           SQ   K+PE   D  V+ +E   ++A   K+  EKK+++
Sbjct: 13  SQDGSKTPETEYDSHVDSIEDIHSLASKRKKLNEKKENL 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,280
Number of Sequences: 5004
Number of extensions: 27800
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)