Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f07
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    75   7e-15
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   1.3  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   4.0  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   7.0  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    25   7.0  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.3  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
 Frame = +2

Query: 278 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITFNQES-GKVFGSLSS 454
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 455 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKL 616
            F  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAIL 112


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 362  DLKTKSESGVEFTSGITFNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQD 541
            D +  SESGV+  S  TF Q +  V     +     +Y  T +   +  +    +I I D
Sbjct: 4560 DKQFSSESGVQMFSHFTFEQSNTNVLALADASMKCFNYANTASHHRSNSDIRQLEIIISD 4619

Query: 542  KI 547
             I
Sbjct: 4620 GI 4621


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 5   YKILLKIMLNFDDILIFFNINQLRKLYDRLPFVDAAVTQETIS 133
           Y ILL +  +F+ +L   N N L   ++   FVD+  +   +S
Sbjct: 4   YAILLSLFFSFERLLTLANANSLYSPFNNSSFVDSDTSFSDLS 46


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 372 PRASLVLNSP---AESPSTRKAERFLAAFPPNLQ 464
           P   L +  P   +  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 238 FIFLALYCLIIWTLNFTIFIFANYHLSY 155
           F+ + ++CL  W L +  F  + +H +Y
Sbjct: 585 FVIVQIFCLARWNLGYNDFGPSAFHYNY 612


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 374 KSESGVEFTSGITFNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 523
           +S SG    S +    +   V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQL--KSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 512 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 610
           T+A D++   ++ A   VTLEGT   +TG  TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,097
Number of Sequences: 5004
Number of extensions: 54407
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)