Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f05
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.33 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.8  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   2.3  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   4.1  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   7.2  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    25   7.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.5  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   9.5  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
 Frame = -1

Query: 621 LASGSCIPSSVLINISSIDSVPV-DSFTTFRFS-------LTSLLYSFILIWSPFTVSSF 466
           ++S S I  S  I  SSI ++P+  S +T+  S       L S   S I+  SP   SS 
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSS 696

Query: 465 TGISSKPLMQSALPAVMNDLKFSLLTITS 379
           + I S   + S   A ++++  S L++T+
Sbjct: 697 SPIPSSSSLVSTYSASLSNITHSSLSLTA 725


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +2

Query: 464 VNEDTVKGDQINMNEYNNEVSENLNVVKESTGT---ESMDDMLINTDEGMHEPEANDGTK 634
           +N     GD+   + +  E S N N+VK + GT   + MD+ +++ D+ + E + +    
Sbjct: 105 INPQNTIGDK---SAHTEEESSNDNLVKITAGTIISDIMDEPVVDEDDKLSEEDLSKEDL 161

Query: 635 EPTLQ 649
           E TL+
Sbjct: 162 ETTLK 166


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = -3

Query: 586 NQHIIHRFCACRFFYYIQVFTDFIIVFVHIDLVSFYCIFIYRHIVQASD 440
           + +++  FC   FF+Y  +F+ F  +F  +    F+ +  ++H++   D
Sbjct: 101 DSNVVPFFC---FFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDIPD 146


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 225 PSAARVISTNSPRCWSVVNPLHILLRYDSHDTARCGHSM 109
           PS A  I+    +CW + N   +LLR    D+   GHS+
Sbjct: 185 PSDAPYITKGLTQCWRLANATTLLLRKAEKDSR--GHSL 221


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 344 VLQAILQYIYTGEVIVSKENFKSF 415
           V+  I Q+ +TG++I++KEN K+F
Sbjct: 405 VISGIKQF-HTGDIIINKENSKNF 427


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -1

Query: 594 SVLINISSIDSVPVDSFTTFRFSLTSLLYSFILIW 490
           ++L N+++++    D   T RF+ T  + +++L W
Sbjct: 175 TILSNMNAVEETVKDGLKTARFAETCRMSTYLLAW 209


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 496 DLVSFYCIFIYRHIVQASDAECSPSCHE*LKVLLAD 389
           +L+S+YC   Y+H+++   A+ +   H  L  L +D
Sbjct: 266 NLLSYYCSHNYQHLIENESADIN-IAHRPLTTLFSD 300


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 497 NMNEYNNEVS-ENLNVVKESTGT----ESMDDMLINTDEGMHEPEANDGTKEP 640
           NMN ++N  S EN+    E+       E MD+ + +  EG    E   G +EP
Sbjct: 361 NMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAYEIEKGAQEP 413


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 492 WSPFTVSSFTGISSKPLM 439
           W P +++ F G+SS PL+
Sbjct: 216 WDPASIADFIGVSSIPLL 233


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 491 QINMNEYNNEVSENLNVVKESTGTESMDDMLINTDEGMHEPEANDGTKEPTL 646
           ++N+    ++  +NL ++KE+T   S D + I +     E  +    + PT+
Sbjct: 60  KLNLRAMMSKSEDNLQILKETTSGSSSDLLNIESPASPAEASSPFTVRTPTV 111


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 255 STMRCTFTKCPSAARVISTNSPRCWSVVNPLHILL 151
           +T+   +   P A + +  N PR W +   + ILL
Sbjct: 818 ATLAIAYDNAPYAMKPVKWNLPRLWGLATIVGILL 852


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,409
Number of Sequences: 5004
Number of extensions: 62562
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)