Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f05
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     102   3e-24
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          81   7e-18
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      34   0.001
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.5  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   5.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.8  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  102 bits (245), Expect = 3e-24
 Identities = 45/114 (39%), Positives = 69/114 (60%)
 Frame = +2

Query: 110 MECPHLAVSWESYRSSICNGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIKTLI 289
           ++  H  + W +Y+SSI +    L+   +FVD+TLA DG  +K HR+VL   SPY + L+
Sbjct: 2   VDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELL 61

Query: 290 ASVDCPHPVIFLNDISYEVLQAILQYIYTGEVIVSKENFKSFMTAGRALCIRGL 451
            S  C HPVI L D+++  L A++++IY GEV V + +  SF+     L + GL
Sbjct: 62  KSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGL 115


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 81.4 bits (192), Expect = 7e-18
 Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
 Frame = +2

Query: 122 HLAVSWESYRSSICNGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIKTLIASVD 301
           H  + W +Y+S++ +    L Q   FVD+TLA +   +K H++VL   S Y + L+ S  
Sbjct: 10  HYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNP 69

Query: 302 CPHPVIFL-NDISYEVLQAILQYIYTGEVIVSKENFKSFMTAGRALCIRGLDDMPVNED 475
           C HP I +  D+ +  L+ I++++Y GE+ VS+   +S +     L I+GL ++P + D
Sbjct: 70  CKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRD 128


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 110 MECPHLAVSWESYRSSICNGLTTLQQRGEFVDMTLAAD 223
           ++  H  + W +Y+SSI +    L+   +FVD+TLA +
Sbjct: 2   VDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 164 NGLTTLQQRGEFVDMTLAAD 223
           NG++ L  + E+VD+T+  D
Sbjct: 396 NGVSALAGKSEYVDITVTTD 415


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 71  QHLNIVSYC*LINMECPHLAVSWESYRSSICNGLTTLQQRGEF 199
           Q +N+     L    CP +A+S      S    LT +++ GEF
Sbjct: 189 QSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEF 231


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 555 VDSFTTFRFSLTSLLYSFILIWSPFTV 475
           V S  T    L++++ +F + W+PF V
Sbjct: 252 VQSRKTITRMLSAVVITFFICWAPFHV 278


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 519 SLLYSFILIWSPFTVSSFTGI-SSKPLM---QSALPAV 418
           ++ + F+L W+P+   +  G+  ++ L+    + LPAV
Sbjct: 286 TIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAV 323


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 461 PVNEDTVKGDQINMNEYNNEVSENLNV 541
           P+N   +K  +I+    NN+  E++++
Sbjct: 465 PINNCEIKAGEIDAERLNNQGIESIDI 491


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 519 SLLYSFILIWSPFTVSSFTGI-SSKPLM---QSALPAV 418
           ++ + F+L W+P+   +  G+  ++ L+    + LPAV
Sbjct: 286 TIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAV 323


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 4/15 (26%), Positives = 13/15 (86%)
 Frame = -3

Query: 241 YFHQMSISCKGHIHK 197
           +FH+++++C+  +H+
Sbjct: 109 FFHKIALTCEDDVHR 123


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 136 VGIVSK*YMQRIDHTPAAWRVCG 204
           V +V   + +R+DH    W  CG
Sbjct: 505 VKLVDFGFAKRLDHGRKTWTFCG 527


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 504 FILIWSPFTVSSFTGI 457
           + + W+P+ V +F+GI
Sbjct: 287 WFMAWTPYLVINFSGI 302


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 504 FILIWSPFTVSSFTGI 457
           + + W+P+ V +F+GI
Sbjct: 37  WFMAWTPYLVINFSGI 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,966
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 26
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)