Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14f02
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.10 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.31 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    29   0.42 
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    27   2.9  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.1  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    26   5.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.1  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    25   6.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   9.0  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 164  PFPKPIVGKPCEPPTPSGAPPAQRAPVA 247
            P PKP V  P   P PSGAPP  +  VA
Sbjct: 1122 PVPKPSVAAP-PVPVPSGAPPVPKPSVA 1148



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 164  PFPKPIVGKPCEPPTPSGAPPAQRAPVA 247
            P PKP V  P   P PSGAPP  +  VA
Sbjct: 1141 PVPKPSVAAP-PVPAPSGAPPVPKPSVA 1167



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 164  PFPKPIVGKPCEPPTPSGAPPAQRAPVA 247
            P PKP V  P   P PSGAPP  +  VA
Sbjct: 1103 PVPKPSVAVP-PVPAPSGAPPVPKPSVA 1129



 Score = 29.5 bits (63), Expect = 0.42
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 164  PFPKPIVGKPCEPPTPSGAPPAQRAPV 244
            P PKP  G P  PP PS APP  +  V
Sbjct: 1180 PVPKPAAGVPPVPP-PSEAPPVPKPSV 1205



 Score = 29.5 bits (63), Expect = 0.42
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +2

Query: 164  PFPKPIVGKPCEPPTPSGAPP 226
            P PKP VG P  PP PS APP
Sbjct: 1199 PVPKPSVGVPPVPP-PSTAPP 1218



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 164  PFPKPIVGKPCEPPTPSGAPPAQR 235
            P PKP V  P  P   SG PP  +
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPK 1183



 Score = 22.2 bits (45), Expect(2) = 4.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 164  PFPKPIVGKPCEPPTPSGAPP 226
            P P P    P   P PSGAPP
Sbjct: 1065 PVPAPSSEIP-SIPAPSGAPP 1084



 Score = 21.8 bits (44), Expect(2) = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 203  PTPSGAPPAQRAPVA 247
            P PSG PP  +  VA
Sbjct: 1086 PAPSGIPPVPKPSVA 1100


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
 Frame = +2

Query: 164 PFPKPIVGKPCEPPTP---SGAPPAQRAPVAPYCHCDAHSY---SPRVEQYKQL----LE 313
           P P PI+G P  PP P   +GA P    P  P        Y   +P+ E   ++    L 
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLT 811

Query: 314 KEQKLCQDYEQLRKQ 358
           +EQK+    E+ RKQ
Sbjct: 812 EEQKI--QLEEARKQ 824


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 224 PAQRAP-VAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVTNDILDHPCD 400
           P +R P V   CH D H+ S     ++  +EKE  +  D  ++RK   +  +D  +H  D
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASD--EHFGD 200

Query: 401 D 403
           D
Sbjct: 201 D 201


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 218 APPAQRAPVAPYCHCDAHSYSPRVEQYK 301
           AP A    +  Y H   H Y PR+E+ K
Sbjct: 99  APEAHEKALTFYHHLKLHPYGPRMEEMK 126


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 461 VADYRTIMASSQSSAPI 511
           VA+YRT++ S QS+AP+
Sbjct: 138 VAEYRTLLNSMQSNAPV 154


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 176  PIVGKPCEPPTPSGAPPAQRAPVAP 250
            P +  P  PP P   PP   AP  P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 236 APVAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVT 373
           A + P C  +  S   R  QY + L++ +++C++   L K +   T
Sbjct: 112 ANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSNLEKLVADHT 157


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 170  PKPIVGKPCEPPTPSG--APPAQRAPVAPYCHCDAHSYSP 283
            P P VG+   PPT SG   PP Q+ P  P  +      SP
Sbjct: 927  PPPKVGETYHPPTASGTRVPPVQQ-PSHPNPYTPVAPQSP 965


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 392 PCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQ 496
           P ++ DS+ T    ATY K  FPVA  + IM + Q
Sbjct: 4   PTNNNDSE-TKPNPATYWKSRFPVARIKKIMQADQ 37


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 284 RVEQYKQLLEKEQKLCQDYEQLRKQMVS 367
           R+E+  + +EK+Q+   +YEQ R+ + S
Sbjct: 839 RLERMHKFIEKDQESIDNYEQNREALES 866


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 270 IPIHRE*NNTNSCSKKNRNYAKTMNSCGNRWSASQMTS 383
           IP HR  N+T   S+K  +++ T N       +SQ +S
Sbjct: 66  IPFHRRANSTPEESRKRVSFSLTSNDGAKSDRSSQKSS 103


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 296 YKQLLEKEQKLCQDYEQLRKQMVSVTNDILDHPCDDLDSKMTTMYQATYKKRSFPVADYR 475
           YK + E  QK   DY   R   +  +  +  H  D    K+T+M+   +KK       Y 
Sbjct: 679 YKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYL 738

Query: 476 TIMASS 493
             MA+S
Sbjct: 739 RTMAAS 744


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 356 QMVSVTNDILDHPCDDLDSKMTTMYQA 436
           Q++ + ND L HP  D D     M Q+
Sbjct: 239 QLIHLFNDFLRHPVFDFDENAIEMLQS 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,457
Number of Sequences: 5004
Number of extensions: 43387
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)