Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e16
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   5.8  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   5.8  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 489 DVVGVIQLCCQYLLQELKPHNCLGIFKFARYYFCGELEKKGKMFIRQHFNK 641
           +++ V+Q C  + L   + H     + ++++YFC       KM++   FN+
Sbjct: 589 EMLNVVQRCVSHFLAINESHFTDFFWPYSQFYFCILSSAIIKMYLDFEFNE 639


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 322  LKYGLTADSMAR*TPIAFKSLHIIVPSQ 239
            LKYG T  S+AR        LH++ P Q
Sbjct: 2094 LKYGRTVHSLARLLAFWHVELHLVSPEQ 2121


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 105 PSIARSRLNKKKIITRQRKCACLPE 179
           P  ARSR N++ I+   RKC    E
Sbjct: 298 PGYARSRKNEQPILLSSRKCVLTDE 322


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 441 VTAENVEYL-LPYADKFDVVGVIQLCCQY 524
           V  ++V Y  LPYA  FD+  ++ L  +Y
Sbjct: 67  VPKDSVRYAHLPYAQAFDIAEIVNLIREY 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,031
Number of Sequences: 5004
Number of extensions: 65114
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)