Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e14
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   5.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   8.9  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    24   8.9  

>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 91  MEVVAALKPTSFDTSIFLIPID 26
           +E+ +AL P  FD S   +PI+
Sbjct: 138 LEIESALPPAMFDASFIFLPIN 159


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 313 NFRDGNAVMSIPGP 272
           NF+ GN VMSI GP
Sbjct: 514 NFQTGNEVMSILGP 527


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 273 GPGIDMTAFPSLKFEEPKL 329
           G  +D   FPS+ FE+P L
Sbjct: 246 GTEVDSERFPSVDFEDPSL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,052
Number of Sequences: 5004
Number of extensions: 30029
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)