Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e08
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   3.9  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.2  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   9.0  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   9.0  

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 96  CLCPNWLAVFSWFWSRIFIAVPDLFT 19
           C C N++A+F   +  IF+  PD  T
Sbjct: 57  CYCANFIALFRVIFGTIFVYSPDGIT 82


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 48  SATKTMRRQLTNLDTDSLPPCPEDTSS 128
           SA+     QL  L TD L P P  TSS
Sbjct: 460 SASSVFNSQLQPLQTDLLSPLPSPTSS 486


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 204 AKIVPTVEAAKTEVPTKPPPMRLNELPLYDNP 299
           A+ VP   +A+T        M+LN +P Y  P
Sbjct: 97  AQSVPPTSSAETTADNSDTEMKLNPIPAYSVP 128


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 630 KLQDW*RTNDQVYLVLKRKGIRS 562
           K+ DW   ND V L   R+GI S
Sbjct: 323 KVHDWEECNDDVALQYAREGIES 345


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 249 TKPPPMRLNE---LPLYDNPHQIYKDYLEDLEKCPKAKSKML 365
           TKP  M+ N+   +PL  NP  ++K   E     P+  +K+L
Sbjct: 200 TKPEMMQFNDGNDIPLRSNPVSLWKSLPEGETFTPQEAAKIL 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,807
Number of Sequences: 5004
Number of extensions: 46687
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)