Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e07
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    28   1.1  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   5.7  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   9.9  

>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 312 RDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENARDGDK 440
           R++A  ARR  +A +  K+   K+K  ++QKDK  E     DK
Sbjct: 252 REKAREARRRRSAQNSAKL--EKEKAKEKQKDKDQEQDTVSDK 292


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 333 RRNHTAGHHDKIMAAKKKPDDEQKDKGLENARDGD 437
           RR HT+GH  +  ++ +   DE       +  D D
Sbjct: 69  RRGHTSGHASEHTSSSRSSHDESDSMSSSSESDSD 103


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 421 FSRPLSFCSSSGFFLAAMILSWC-PAV 344
           FS+P+ FCS S  F+A MI   C P+V
Sbjct: 464 FSKPIGFCSVS--FVALMIPILCFPSV 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,908
Number of Sequences: 5004
Number of extensions: 24798
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)