Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e07
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0584 - 19010345-19010656,19010959-19011018                       28   4.4  
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903...    28   5.8  
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377...    28   5.8  
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001...    28   5.8  
03_02_0545 + 9373344-9374963                                           27   7.6  

>08_02_0584 - 19010345-19010656,19010959-19011018
          Length = 123

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 315 DRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENARDGDK 440
           + A  A+ +H     DK  A + KP+ E+K+K  +N  +  K
Sbjct: 4   EAADVAKEHHKEEKKDKEHAKEAKPEKEKKEKKEKNGEEAAK 45


>08_02_1147 -
           24688686-24689729,24689875-24690036,24690339-24690368,
           24690713-24690860,24691302-24691489
          Length = 523

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 264 PRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENARD 431
           P   A +K  V+ ++K+      +R H   HH K   +K+    E  D    + RD
Sbjct: 167 PIKMAEIKKSVEAEKKQKEEKKEKRKHKKRHHHK-SKSKRHHSSENSDSEESDGRD 221


>01_05_0619 -
           23737178-23737378,23737460-23737516,23737597-23737755,
           23739477-23739621,23739725-23740136,23740693-23740855
          Length = 378

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 152 ESIGRNGPERGDGAGGREKEAERR 223
           E  GRNGP RG G  G  +  +RR
Sbjct: 67  EGAGRNGPGRGSGGFGGGRIGQRR 90


>01_05_0147 +
           18597194-18597643,18598347-18598681,18600073-18600147,
           18600325-18600427,18601554-18601642,18602953-18603064,
           18604093-18604146,18604271-18604319,18606236-18606347,
           18606389-18606436,18607000-18607327
          Length = 584

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 309 KRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENARDGDK 440
           KR +A+++ R H   HH     +++  DD+ + +     RD ++
Sbjct: 63  KRRKASSSSRRHRHHHHKSSGRSRRSRDDDDERRRRRRRRDEER 106


>03_02_0545 + 9373344-9374963
          Length = 539

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 297 DFQRKRDRATAARRNHTAGHHDKIM 371
           DF+ +R   TAA +  + GHH K++
Sbjct: 306 DFELERPATTAATKTSSHGHHKKLL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,731
Number of Sequences: 37544
Number of extensions: 222214
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)