Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e07
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   6.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   6.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 477 LTWTATWIEHENT 439
           L+W + WI HE T
Sbjct: 258 LSWVSFWINHEAT 270


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 492 CPGAHLTWTATWIEHENTCLH 430
           CP   + +  TW+ + N+ L+
Sbjct: 357 CPSDRMVYFITWLGYVNSALN 377


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 492 CPGAHLTWTATWIEHENTCLH 430
           CP   + +  TW+ + N+ L+
Sbjct: 357 CPSDRMVYFITWLGYVNSALN 377


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 492 CPGAHLTWTATWIEHENTCLH 430
           CP   + +  TW+ + N+ L+
Sbjct: 357 CPSDRMVYFITWLGYVNSALN 377


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 316 TVRRPLGATTRPGTTT 363
           TV  PLGA   P T T
Sbjct: 303 TVTAPLGAEIEPSTQT 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,144
Number of Sequences: 438
Number of extensions: 1855
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)