Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14e05
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 30 0.25
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 1.8
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 27 3.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 4.1
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 5.4
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 7.2
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 7.2
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 9.5
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 9.5
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 9.5
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -2
Query: 601 SVTALSLKNLTKIFL*SNKVGKYYLDQFSVYKNAN*VAMFTLELPLYFHCHLRIRLQDRQ 422
S+ L K++ + NKV QFSV KN + MF LP Y+H H+ I D +
Sbjct: 196 SIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 175 SPQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPDTVP 339
S Q D ++ + Q + HRR+D RS YRS R H+++ DT P
Sbjct: 305 SQQEDYDKPKNT-QVSRSSNHHRRYDS----YHPDSRSDSYRSKREHYDNRDTGP 354
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 272 LHNIDRINTE--VHGVIMNIPIPFPLPE 349
LH + ++N + VHGV++ +P+P L E
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNE 138
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 276 CSGVNCRPIVASVFLFSIQ 220
CSGVNC ++ VF F+ +
Sbjct: 833 CSGVNCHDLIYHVFSFAAE 851
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -3
Query: 180 WTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYKTAR*RVHDSRAYG 7
W ++SL + + + ++KS F+++ FG +KN Y V+ A G
Sbjct: 163 WLLSSLAVNEFRTIQN-ISKSIWYTRLGIFFIEETHFGDLKNYYTNVVDEVNQKAAAG 219
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 160 VQTSDSPQRDGERMRRVVQSLYTE-EKHRRHDRPAVYTTAQHRSH--------KYRSSRG 312
++ + P+ +R+ V S + + + H P V + ++H +YRSS
Sbjct: 35 LKITSPPRNPPQRLHPVDFSEHADTDDDMNHPLPRVQSPVHIKNHIDPKLAEDRYRSSAA 94
Query: 313 HHEHPDTVPPAGV 351
H P ++PP+ +
Sbjct: 95 RHFEPISIPPSAI 107
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 179 HNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPFPLPESDA 358
H+ V +S S+ ++ +GL F+P + + HG + + PLP S +
Sbjct: 34 HHNLVDAFMQSPSYSTQPKSAVEPLGLSFSPGYISPSSQSPHHGPVRSPSSRKPLPASPS 93
Query: 359 -CKDNGLTCPL 388
+D+ L P+
Sbjct: 94 RTRDHSLRVPV 104
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 186 TLWTVASLDPQSLKNLASALAKSTAAVMKNNI 91
T W V DP LK A+ + + +++ +NI
Sbjct: 300 TRWVVDKADPNFLKPKAAMILEKILSILSSNI 331
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 251 IGLQFTPLH--NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLK-EGTLADYKAT 421
+ L+ T LH + +RI++++H I N+P F L + + + L C ++ G +
Sbjct: 267 VALEATLLHYPDYERIHSDIHVRITNLPTCFTLRD---LRQSHLNCLVRVSGVVTRRTGL 323
Query: 422 LPILK 436
P LK
Sbjct: 324 FPQLK 328
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 374 LTCPLKEGTLADYKATLPILKSY--PKVTVEVKWELQSEHGDLVCVLINAKLV 526
L PL L + +P + Y K +V+W+ Q DL CV+ +++ +
Sbjct: 16 LAYPLPPIILTNPLTWIPYIYRYLFRKTPRQVQWQCQLHESDLSCVVTDSEAI 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,903
Number of Sequences: 5004
Number of extensions: 52102
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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