Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14e05
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 31 0.80
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 30 1.8
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 2.4
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 29 4.2
04_04_0946 - 29579779-29580004,29580098-29580210 29 4.2
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 29 4.2
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427 29 4.2
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 28 5.6
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913... 28 5.6
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 166 TSDSPQRDGERMRRVVQSLYTE-----EKHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPD 330
TSDS R R + +S EK R RP + T HR H +R HH+H
Sbjct: 1274 TSDSNNHKHRRSRSLEESSDDAAAGEYEKVRNGKRP--HKTGHHRHH-HRHHHHHHDHRS 1330
Query: 331 TVPPAGV*RVQGQRA 375
+ P R GQ+A
Sbjct: 1331 SSEPNDKKRQDGQKA 1345
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 221 CILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPFPLP 346
C+ N D + F P ++D IN GV++ + P+P P
Sbjct: 448 CVAFTNVDTKLISVFRPFRDLDIINQGSEGVVVKLLQPWPPP 489
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +1
Query: 163 QTSDSPQRDG--ERMRRVVQSLY-TEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPDT 333
+ SDS + DG ER + V S + EEK RHD+ Q R R H D
Sbjct: 210 ENSDSEESDGRDERRKSVQASEHKREEKRSRHDKK---DHGQDSEDDERRKRRHATSEDD 266
Query: 334 VPPAGV*RVQGQRAD 378
P +GQR D
Sbjct: 267 EPRKSQKEKKGQRED 281
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 275 HNIDRINTEVHGVIMNIPIPFPLPESDACKDNGL 376
H++D + E H ++ +IP PL +AC N L
Sbjct: 585 HSLDTPDGEKHILLKDIPSTIPLDLKNACSQNSL 618
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 235 KHRRHDRPAVYTTA---QHRSHKYRSSRGHHEHPDTVP 339
KHRR R A + + +HR+H + R HH+ P P
Sbjct: 59 KHRRKKRAAAHAVSVRKEHRNH-HHHHRHHHQQPQPRP 95
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 214 QSLYTEEKHRR--HDRPAVYTTAQHRSHKYRSSRGHHEHPDTVPPAGV*RVQGQRAD 378
+S + KHRR HD A S R RGHH H V PA +G+ D
Sbjct: 8 RSHLSPRKHRRSPHDDDDAEDGA---SSPKRHKRGHHRHRHRVSPAAADPAEGEAED 61
>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
Length = 474
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 412 IIRQGSLLEGAGQPVVLARV-RLRQGER--YRDVHDDPVNFCIYAIDVVQWCKLQADRGV 242
++R LL AG+ +A V R G +R VH + F + ++ +W +L A +GV
Sbjct: 76 VLRDADLLFSAGEAAGVAAVGRALAGHPGPFRVVHIEHCMFAFHRPELAEWARLVAAKGV 135
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 157 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHE 321
RV+ S R R RR+ +S R ++ + R+H +RS R HH+
Sbjct: 385 RVEMDGSDLRHRLRRRRINESSLAISPERNGEQRRRDERYRERAHGHRSHRDHHQ 439
>04_03_0434 +
15889712-15889797,15890086-15890287,15891184-15891323,
15891420-15891559,15891762-15891913,15892773-15892902,
15892990-15893141
Length = 333
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 410 YKATLPILKSYPKVTVEVKWELQSEHGDL 496
+KATL +L SY E KWE ++ DL
Sbjct: 174 FKATLELLVSYKDQVAESKWENEAAAEDL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,705
Number of Sequences: 37544
Number of extensions: 375341
Number of successful extensions: 1098
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -