Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14e05
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67698-1|CAA47928.1| 151|Homo sapiens protein ( H.sapiens tissu... 95 2e-19
BC002532-1|AAH02532.1| 151|Homo sapiens Niemann-Pick disease, t... 95 2e-19
AK222474-1|BAD96194.1| 151|Homo sapiens Niemann-Pick disease, t... 94 4e-19
AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein. 31 3.6
AC005254-1|AAC25581.1| 315|Homo sapiens PGCN_HUMAN, PARTIAL CDS... 31 4.7
AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein p... 31 4.7
AY046538-1|AAL03971.1| 388|Homo sapiens retina specific regulat... 30 6.2
AF366054-1|AAK54122.1| 273|Homo sapiens RGS20 ret splice varian... 30 6.2
>X67698-1|CAA47928.1| 151|Homo sapiens protein ( H.sapiens tissue
specific mRNA. ).
Length = 151
Score = 95.1 bits (226), Expect = 2e-19
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Frame = +2
Query: 98 FFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLH 277
F + A A AE FKDCGS + V VS C + C L + ++ + FT
Sbjct: 8 FLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNI 65
Query: 278 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 457
VHG++M +P+PFP+PE D CK +G+ CP+++ Y LP+ YP + +
Sbjct: 66 QSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKL 124
Query: 458 EVKWELQSE-HGDLVCVLINAKLV 526
V+W+LQ + + L C I ++V
Sbjct: 125 VVEWQLQDDKNQSLFCWEIPVQIV 148
>BC002532-1|AAH02532.1| 151|Homo sapiens Niemann-Pick disease, type
C2 protein.
Length = 151
Score = 95.1 bits (226), Expect = 2e-19
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Frame = +2
Query: 98 FFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLH 277
F + A A AE FKDCGS + V VS C + C L + ++ + FT
Sbjct: 8 FLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNI 65
Query: 278 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 457
VHG++M +P+PFP+PE D CK +G+ CP+++ Y LP+ YP + +
Sbjct: 66 QSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKL 124
Query: 458 EVKWELQSE-HGDLVCVLINAKLV 526
V+W+LQ + + L C I ++V
Sbjct: 125 VVEWQLQDDKNQSLFCWEIPVQIV 148
>AK222474-1|BAD96194.1| 151|Homo sapiens Niemann-Pick disease, type
C2 precursor variant protein.
Length = 151
Score = 93.9 bits (223), Expect = 4e-19
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Frame = +2
Query: 98 FFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLH 277
F + A A AE F+DCGS + V VS C + C L + ++ + FT
Sbjct: 8 FLLLALSTAAQAEPVQFRDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNV 65
Query: 278 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 457
VHG++M +P+PFP+PE D CK +G+ CP+++ Y LP+ YP + +
Sbjct: 66 QSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKL 124
Query: 458 EVKWELQSE-HGDLVCVLINAKLV 526
V+W+LQ + + L C I ++V
Sbjct: 125 VVEWQLQDDKNQSLFCWEIPVQIV 148
>AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.
Length = 1321
Score = 31.1 bits (67), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 250 DRPAVYTTAQHRSHKYRSSRGHHEH 324
DRP + T RSH+ R HH+H
Sbjct: 1265 DRPQIVCTKPRRSHRMRGHHHHHQH 1289
>AC005254-1|AAC25581.1| 315|Homo sapiens PGCN_HUMAN, PARTIAL CDS
protein.
Length = 315
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 250 DRPAVYTTAQHRSHKYRSSRGHHEH 324
DRP + T RSH+ R HH+H
Sbjct: 259 DRPQIVCTKPRRSHRMRRHHHHHQH 283
>AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein
protein.
Length = 1335
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 250 DRPAVYTTAQHRSHKYRSSRGHHEH 324
DRP + T RSH+ R HH+H
Sbjct: 1279 DRPQIVCTKPRRSHRMRRHHHHHQH 1303
>AY046538-1|AAL03971.1| 388|Homo sapiens retina specific regulator
of G-protein signaling splice variant 6 protein.
Length = 388
Score = 30.3 bits (65), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 206 ESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMN 322
+ + C+ K + +I QF PL R NT++H + N
Sbjct: 6 QDNQECLQKHFSRPSIWTQFLPLFRAQRYNTDIHQITEN 44
>AF366054-1|AAK54122.1| 273|Homo sapiens RGS20 ret splice variant 1
protein.
Length = 273
Score = 30.3 bits (65), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 206 ESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMN 322
+ + C+ K + +I QF PL R NT++H + N
Sbjct: 6 QDNQECLQKHFSRPSIWTQFLPLFRAQRYNTDIHQITEN 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,076,814
Number of Sequences: 237096
Number of extensions: 1988032
Number of successful extensions: 4874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4862
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -