Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e05
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    29   3.8  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    29   3.8  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    29   3.8  
Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical...    28   5.0  
AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    28   6.6  
U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical p...    27   8.7  
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    27   8.7  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 179 HNVTVSGCEESSSHCILKRNTDA--TIGLQF 265
           HN T+SGCE +SS   LK + D+  T G++F
Sbjct: 625 HNSTISGCESNSSVATLKMSIDSNCTTGIEF 655


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 158 GSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPF 337
           G+  +T H    S    S+ H I++R     I  Q   + N+D++  E  GV++ IP   
Sbjct: 93  GTNQSTHHTTRAS---LSTEHRIIERCDYMLIIAQTNSIDNMDKLEIEAEGVLVEIPYKK 149

Query: 338 PL 343
           P+
Sbjct: 150 PI 151


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 134 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 298
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 168 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 219


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 134 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 298
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 168 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 219


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 134 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 298
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 216 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 267


>Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical
           protein AC3.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 291 MRSMLCSGVNCRPIVASVFLFSIQ*LDDSSHPLTVTLWTVASLDPQSLKN 142
           +RS+L     C  IV    LFS+  +    H    T WT+ +L   S  N
Sbjct: 252 LRSLLAQFTTCFLIVGPASLFSLLVVIRYEHSQVATHWTIVALTLHSSAN 301


>AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical
           protein Y53F4B.13 protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 213 DDSSHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYK 46
           D+  H   +     +S  P+S ++  S LAK  AA  +     ++  F ++K  Y+
Sbjct: 11  DEYQHKEQMVTNRTSSFQPKSTEDSISKLAKMRAADRREEFMEERASFSAVKRGYQ 66


>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 538 KYYLDQFSVYKNAN*VAMFTLELPLYFHCHLRIRLQDR---QCCFI 410
           KY  D  SV      ++     LP+YFHC+  IR Q R   + CFI
Sbjct: 401 KYLADLSSVLT----ISSTAFRLPVYFHCNGDIRAQIRHFAKACFI 442


>U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical
           protein B0280.10 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 287 RINTEVHGVIMNIPIPFPLPESDACKD 367
           RI+ E +GV + IP+     E D C+D
Sbjct: 258 RISIETYGVFLTIPLELIKTELDICED 284


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
           protein C14B9.8 protein.
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +1

Query: 460 SKVGAPK*TWRLSLRSYKR*TGLNSTSRLY*IRGRF*LDFSDLMPSQR 603
           +K+G  K    LS R   R  GL STSRLY I  +F +     M S+R
Sbjct: 487 AKIGESK-KLNLSGRPLDRPIGLLSTSRLYQIGNKFVIFTPQFMDSRR 533


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 172 DSPQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHH 318
           + P+R GE       +   +  HR+H RP  +    H+ H  R  + HH
Sbjct: 119 EKPERSGEGS----STEQRDRDHRQH-RPTSHHHRDHKDHHRRDDKHHH 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,928
Number of Sequences: 27780
Number of extensions: 306339
Number of successful extensions: 959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)