Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e04
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0130 - 10474607-10475994,10479609-10479706,10479878-104800...    29   3.9  
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746...    28   5.2  
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105...    28   6.9  
12_02_1022 - 25371291-25371910,25373593-25374046                       27   9.1  
06_03_1394 - 29848356-29848685,29848832-29848998,29849120-298492...    27   9.1  
04_03_0886 + 20556238-20556580,20556678-20556700                       27   9.1  
02_05_0771 - 31628535-31629133,31629223-31629987,31630808-316309...    27   9.1  

>11_03_0130 -
           10474607-10475994,10479609-10479706,10479878-10480047,
           10480382-10480465,10481359-10482009,10482016-10482084
          Length = 819

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 300 LLFASERPSIRLPQKWLPRVATVPNLTKTPLRTSPCS 410
           +LF    PS RLP  W P   T   +T   +R  P +
Sbjct: 607 VLFGDHNPSGRLPVTWYPEEFTKVPMTDMRMRADPAT 643


>03_02_0804 +
           11374219-11374221,11374326-11374473,11374556-11374629,
           11374736-11375233,11375749-11376093,11376178-11376390,
           11376669-11377457,11377686-11377769
          Length = 717

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 373 FGTVATLGSHFCGSRIEGRSDANKSNQYT----KYYRVTPGFS 257
           FGT +++GS    +RIE  + +N S+QY      YY  T G++
Sbjct: 5   FGTSSSMGSASHPARIEYNTSSNVSSQYIYEQGLYYPATNGYA 47


>11_03_0132 -
           10505910-10505996,10507419-10507499,10509582-10510528,
           10510645-10510742,10511273-10511442,10511551-10511832,
           10514544-10514936
          Length = 685

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 300 LLFASERPSIRLPQKWLPRVATVPNLTKTPLRTSPCS 410
           +LF    PS RLP  W P   T   +T   +R  P +
Sbjct: 563 VLFGDHNPSGRLPVTWYPEEFTRIPMTDMRMRADPAT 599


>12_02_1022 - 25371291-25371910,25373593-25374046
          Length = 357

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 373 FGTVATLGSHFCGSRIEGRSDANKSNQYTKYYRVTPGFSRSG 248
           FG V  LG  F G  +EGRS +  + +  + Y    G+   G
Sbjct: 268 FGAVFGLGDGFLGLAVEGRSSSRLAARSCRRYACAWGWGFEG 309


>06_03_1394 -
           29848356-29848685,29848832-29848998,29849120-29849264,
           29849380-29849814,29849896-29850179,29850260-29850455
          Length = 518

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 337 GSRIEGRSDANKSNQYTKYYRVTPGFSRSGLEHSSRFASF*EIFSGIYTRTLKSSSS 167
           GS +   + A  +     Y  +   +S S L+H  R  +F +   G YTRT    S+
Sbjct: 192 GSDVAAETAAAMAAASLVYKTINKTYSSSLLDHGERLFAFADKHRGSYTRTFPELSA 248


>04_03_0886 + 20556238-20556580,20556678-20556700
          Length = 121

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 314 GTAFNTTAAEVAAKGRNCAKPYQDPSANQP 403
           G    T A +VA K   CAK  QDP A  P
Sbjct: 28  GKCGKTPAEKVALKLAPCAKAAQDPGARPP 57


>02_05_0771 -
           31628535-31629133,31629223-31629987,31630808-31630905,
           31631024-31631193,31631297-31631596,31632208-31632618
          Length = 780

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 300 LLFASERPSIRLPQKWLPRVATVPNLTKTPLRTSP 404
           +LF    P  RLP  W P+  T   +T   +R  P
Sbjct: 574 VLFGEHNPGGRLPVTWYPKEFTSVPMTDMRMRADP 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,031,116
Number of Sequences: 37544
Number of extensions: 283043
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)