Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14e02
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728...    34   0.11 
01_06_1572 + 38319544-38319849,38320427-38320513,38320584-383206...    27   9.7  

>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
            7280242-7280547,7280643-7280857,7281395-7281689,
            7281906-7281983,7282070-7282705,7283016-7283102,
            7283945-7284265,7285503-7287599
          Length = 1483

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 272  PTKFIKNQFFNR*LKQH*YFLICKSQNIFYTIDINCMIKNKCISMTKPNKY 424
            P+ FIK +F    L    Y L   S  ++YTI + CMI+N  +++ + N+Y
Sbjct: 1165 PSNFIKKEFVGMSLS---YGLSLNSL-VYYTISMTCMIENDMVAVERVNQY 1211


>01_06_1572 +
           38319544-38319849,38320427-38320513,38320584-38320676,
           38321491-38321567,38321974-38322562,38322701-38322794,
           38322884-38322996,38323438-38323524,38323842-38323964,
           38324058-38324192,38324437-38324484,38324993-38325094,
           38325321-38325716
          Length = 749

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 365 IDINCMIKNKCISMTKPNKYYLGSYNFRQVANSLHYFL 478
           ++IN MIK++  +  K N+++ GS +  Q+AN    +L
Sbjct: 508 MEINEMIKSRVAAKAKVNEHHSGSADDFQIANDEKRYL 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,605
Number of Sequences: 37544
Number of extensions: 221040
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)