Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d24
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   1.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   1.6  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   2.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   3.8  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   5.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   5.0  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +2

Query: 47  TEKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKSTWLLISPVAPDE 208
           ++ +   T ++++   +G PP  PK  +  ++I+     T        P+ PDE
Sbjct: 76  SQAQRGATLQELDYNKAGDPPILPKQAKDDHHIKRSSSETADFTPFRIPINPDE 129


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 392 ISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAE-LDSDHPGFTD 526
           I+RNY D  + +PW  R + + D      L +  E LD DH G  D
Sbjct: 512 ITRNYLDWITQLPWGKRSVENFD------LDHAKEVLDRDHYGLKD 551


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 137 CHLPSILACREASQTWV 87
           CH P I+AC   S+ W+
Sbjct: 676 CHRPLIIACHAESRNWI 692


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 459  IALPTRSSHTVPNWTLITLDLPILF 533
            +AL T S H +P W ++  +L I+F
Sbjct: 1498 LALRTSSKHLLPLWPIVVSELLIIF 1522


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 461 RFANQILSYGAELDSDHPGFTDPVYRDRRKY 553
           R  +  +SY  E +SD P F D  +  RR+Y
Sbjct: 15  RSGDTFVSYEIETESDLPVFEDKKFSVRRRY 45


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 32  TPLPATEKEMDITAKQIEQPTSGSPP 109
           TP   T+KE D + K+ E  T  SPP
Sbjct: 25  TPSEFTKKEEDSSTKESELQTRSSPP 50


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 326 HGSGDFGAALEELKKNVGYLNIISRNYKDN 415
           H   +F    EE +K  GY N + RN +DN
Sbjct: 609 HFVAEFLGETEEAEKLAGYENAMLRNLEDN 638


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 267 TLNPDLPQGVQAMSSWLN 320
           TLN  LP G+Q M+ +LN
Sbjct: 442 TLNNGLPMGIQIMAQYLN 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,393
Number of Sequences: 5004
Number of extensions: 62507
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)