Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d24
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    31   0.73 
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983...    31   0.96 
02_05_0953 - 33027007-33029079                                         31   0.96 
02_05_0956 - 33064104-33066425                                         30   1.3  
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365...    29   2.2  
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656...    29   2.2  
07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644           28   5.1  
07_03_1720 + 29019578-29020172,29021208-29021383,29022993-29023058     28   6.8  
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410     27   8.9  

>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +2

Query: 311 MVECEHGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVPW 433
           +V+CE   G++G+ L ELKK + +LN ++   + NR ++ W
Sbjct: 243 LVKCEQWGGNYGSKLNELKK-MWFLNRVAG--QRNRGSMDW 280


>03_02_0610 +
           9834083-9834368,9834495-9834556,9834695-9834787,
           9835689-9835805,9835972-9836055,9836198-9836293,
           9836368-9836445,9836548-9836637,9836733-9836800,
           9836940-9837021,9838203-9838289
          Length = 380

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 212 GSLARYLGIFSSHGVNLSHIESRSSTRRP 298
           G L + LG+F+   +NL+ IESR   +RP
Sbjct: 284 GQLFKALGVFALREINLTKIESRPHKKRP 312


>02_05_0953 - 33027007-33029079
          Length = 690

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 526 SCLPRPPQIFRRHCIQLQARRASALC 603
           S  P PP+ FR HC+  ++  A+A C
Sbjct: 75  SSFPPPPRTFRGHCVSTRSFNATAYC 100


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 532 LPRPPQIFRRHCIQLQARRASALC 603
           LP PP  FR HCI   +  A+A C
Sbjct: 172 LPPPPSTFRGHCISTPSFNATAYC 195


>11_04_0272 -
           15631598-15631898,15633162-15633291,15636394-15636544,
           15636632-15636730,15636912-15637063,15637079-15637301
          Length = 351

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 160 ITTLADVVATFHQFWLVGRRARRGLFNLLRRDV-HFFFCCWKRRV 29
           +T   +VVA FHQF L+G     G  ++ ++D+   F  C++R++
Sbjct: 119 LTIFREVVAMFHQFVLIG---GEGALSVEKQDILGTFVLCYRRQI 160


>08_02_1382 +
           26565137-26565210,26565330-26565468,26565489-26565603,
           26565761-26565828,26565907-26566551,26566927-26567031,
           26567115-26567465
          Length = 498

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 203 DEAGSLARYLGIFSSHGVNLSHIESRSSTRRPGYEFMVECEHGSGDFGAALEELKKNVG 379
           D  G L+    IF  HG++++H E  +   R    F V    G      A+E ++  +G
Sbjct: 392 DRVGLLSDVTRIFREHGLSVTHAEVATRGARAANVFYVVAASGEPVEAHAVEAVRAEIG 450


>07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644
          Length = 395

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 128 EGGNYIREGRDSTKSTWLLISPVAPDEAGSLARYLGIFSSHGVN 259
           EG NY+ E   S  S  L    V  D+A S  R  G+  + G N
Sbjct: 336 EGFNYLEETCPSLLSDLLATVAVVDDDAASFNRKRGVGGNEGAN 379


>07_03_1720 + 29019578-29020172,29021208-29021383,29022993-29023058
          Length = 278

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 194 VAPDEAGSLARYLGIFSSHGVNLSHIESRSSTRRPGYEFMVECEHGSGDFGAALEELKKN 373
           +AP  AGS A  LG+F+      S   S S    P    M+  +   G  G  L  + + 
Sbjct: 109 LAPGHAGSPASSLGMFAHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQ 168

Query: 374 VGYLN 388
           +GY++
Sbjct: 169 MGYMD 173


>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
          Length = 1279

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -3

Query: 423 ADRLSL*FLEIIFRYPTFFFSSSRAAPKSPEPCSHSTMNS*PGRLVEDLDSM*LRLTP*E 244
           A ++   +LE +      FF ++ ++P SP+  + +T       + +D D++   L    
Sbjct: 84  ASKMRRLYLEAVLSQEVAFFDAAPSSPSSPQAQAQATTFRVISTVSDDADAIQDFL---G 140

Query: 243 EKMPKYLANEPASSGA 196
           EK+P  LAN     GA
Sbjct: 141 EKLPMVLANATLFFGA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,428,892
Number of Sequences: 37544
Number of extensions: 456374
Number of successful extensions: 1409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)