Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14d22
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 1.1
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 2.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 2.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 3.4
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.0
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 6.0
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 25 6.0
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 7.9
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 24 7.9
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 24 7.9
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 124 LVDFLLVLNRHT**KVLKYFIKYKIDKKL 38
++ F+L+ NRH ++ KY++ + D+K+
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKV 29
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 2.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 329 TNISVFNNNIYNASRARQHSTGPPFAQA 246
+N+ + N N + +SR+++ TGP + A
Sbjct: 334 SNLDIPNENAHESSRSKKKHTGPSLSSA 361
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 137 KEFKEQVIKTVTRIEESHNVVG 202
K F+EQV K ++IE H V+G
Sbjct: 31 KAFREQVEKHFSKIERLHQVLG 52
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 394 QNIYLSSHLNKKIEKKIYVRQKLIFPF 314
Q + LNK IEKK ++KL+ PF
Sbjct: 1081 QKFFYQVRLNKGIEKKQEWKEKLLGPF 1107
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 178 NPSYCLDYLLLEFLWHFALVDFLLVLN 98
N +Y YL +F+W + VD+LL+ N
Sbjct: 916 NETYSSMYLAGKFVWDTSDVDYLLMYN 942
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 395 SKYLFIKSFE*KN*KENLC*TKTNISVFNNNI 300
+KY + FE KN ENL +N++ NN+
Sbjct: 123 TKYFNSRHFEIKNAVENLPSFSSNLTTIGNNL 154
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 6.0
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +1
Query: 199 WSSV--SVKXXXXXXIDQAWANGGPVECCLAREALYILLLKTEILVFV*HKFSF 354
WSSV S+K GP CL +LYI L +L H+ F
Sbjct: 135 WSSVGNSLKCQAISSFRDETVKSGPAVMCLDNASLYIGLKDGNLLHVTVHETGF 188
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 177 LKRVTTLLEFCICQKTPILQDRPGLGKW 260
L + TL IC K P + G GKW
Sbjct: 115 LSDLVTLATLKICSKKPTQKYPAGFGKW 142
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 6 FVTHFLKKHIINFLSILYFMKYFNTFY*VCR 98
F F + +F S L+ +FN F+ +CR
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFFRLCR 137
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 311 NNNIYNASRARQHSTGP 261
N N+ NASR R H T P
Sbjct: 172 NYNLRNASRTRSHQTLP 188
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 211 IQNSNNVVTLFNPSYCLDYLLLEFLWHFALVDFLLVLNR 95
I++ N+ + F L +L++ L+ F L+ LLV+NR
Sbjct: 4 IEDLNHFINYFPLVLRLFFLVVFGLYSFTLILHLLVINR 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,307
Number of Sequences: 5004
Number of extensions: 28526
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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