Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14d19
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 38 9e-04
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.100
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 27 1.6
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 1.6
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.1
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 2.8
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 5.0
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 5.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 5.0
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 5.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 6.5
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 6.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 6.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 38.3 bits (85), Expect = 9e-04
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 448 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQG 597
+V+ E +YR + I V G ++P P E +GFP Y+ +K G
Sbjct: 92 NVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLG 141
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.5 bits (68), Expect = 0.100
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 382 SILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNS 501
S L N KG+KLR + +Y VK +Q+K+ D +S N+
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNN 105
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 487 RSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLK 588
+ D +I++ G D+P+P + E +G P + LK
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLK 265
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 331 IVETNVFHTHIIPKVQYSILHNQILKGTKLRELQILRFYS-VKTEQKKEDDDYRSDNSIT 507
I+ NV + I PK+ L Q + G+ + + RF+ + EQ+ +
Sbjct: 684 ILNRNVDKSKIDPKLIRKTLPFQNINGSLVSGFVVKRFFEIISKEQEASSQQENIQKAYE 743
Query: 508 VIGQDIPS-PFVDIEASGFPEYIKTFLK 588
+I ++ P+ + + F E+ KTF++
Sbjct: 744 IIEKEFPTIGSAENHIAQFLEFWKTFME 771
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 421 RELQILR--FYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFP 564
R+L I R F + E + E + YR+ + ++ D+P FV+ S +P
Sbjct: 697 RQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYP 746
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 345 CISHSHYSQGSIFYIAQSNIKRYKTTRATNLKILFC 452
CIS H FY + ++Y+++ A I+ C
Sbjct: 334 CISEVHLDNHQTFYALEKIFQKYESSEAVPFCIILC 369
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 347 YFTLTLFPRFNILYCTIKY*KVQNY 421
YF L FN YC +Y V NY
Sbjct: 461 YFFLLSHEMFNPFYCLFEYSSVDNY 485
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 284 Y*NERSCPNYYLTNNK**KQMYFTLTLF 367
Y N SCPN+Y ++K K+ Y LT+F
Sbjct: 14 YQNLCSCPNHYAQHSK-NKRNYHQLTIF 40
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 400 ILKGTKLRELQILR-----FYSVKTEQKKEDDDYRSDN 498
ILK ++ +Q LR YSV TE + D RSDN
Sbjct: 234 ILKDSQKERIQALRNKAIKTYSVSTESAERIDSIRSDN 271
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -2
Query: 484 NHHL-PFSAQFLQNKILRF 431
N HL PFS FL+N ++RF
Sbjct: 85 NQHLFPFSISFLKNDVVRF 103
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 209 EEV*IRIDKNTFPCINMYRKRLNSSVLLYLYGTYAIKPLVSNL 81
E++ ++++ NT+ ++++ ++ S L L T AI +SNL
Sbjct: 23 EKILLKMEDNTYEYVDVFLEKYESQQKLLLKLTKAITEYLSNL 65
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 4 FFFFNEVKKNCVQCTXILPMN*KQNYKFDTSGLIA*VP*RYSSTELFNRLRYILMQGNVF 183
+FFF++ + ++ D ++ +P S +L N++ YIL +GN F
Sbjct: 491 YFFFSKYIARLASLGYLRESMLNSSFMDDQRKILVQLPILRMSQQLKNKIYYILSKGNYF 550
Query: 184 L 186
+
Sbjct: 551 V 551
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 255 ENGFKCAHKVIKTKGVVQIITLQTTNSRN 341
+NG K K+++ KG I ++TT N
Sbjct: 134 DNGIKALEKIMRQKGRFDNIVIETTGIAN 162
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 421 RELQILRFYSVKTEQKKEDDDYRSD 495
R + +RF S E +EDDDY S+
Sbjct: 3 RRARSIRFSSDDNEDNEEDDDYYSN 27
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 8.7
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Frame = +3
Query: 189 YSYLNFFIEIAHRMSG*KQK*IENGFKCAHKVIKT---KGVVQIITLQTTNSRNKCISHS 359
YS+ IEI S + ++N C H+ + K + ++ + RN+C ++S
Sbjct: 770 YSFFKESIEIRSSHSVLLRTILKNSELC-HRFFPSMSKKDLTKLFGGVSDQQRNECDNYS 828
Query: 360 -HYSQGS------IF---YIAQSNIKRYKTTRATNLKILFC 452
HY+ S +F + ++S IK+Y+T + ++LFC
Sbjct: 829 NHYNDNSNDNDNDVFLKLHWSKSAIKKYETKASIFNELLFC 869
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.7
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Frame = +3
Query: 189 YSYLNFFIEIAHRMSG*KQK*IENGFKCAHKVIKT---KGVVQIITLQTTNSRNKCISHS 359
YS+ IEI S + ++N C H+ + K + ++ + RN+C ++S
Sbjct: 770 YSFFKESIEIRSSHSVLLRTILKNSELC-HRFFPSMSKKDLTKLFGGVSDQQRNECDNYS 828
Query: 360 -HYSQGS------IF---YIAQSNIKRYKTTRATNLKILFC 452
HY+ S +F + ++S IK+Y+T + ++LFC
Sbjct: 829 NHYNDNSNDNDNDVFLKLHWSKSAIKKYETKASIFNELLFC 869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,738
Number of Sequences: 5004
Number of extensions: 50945
Number of successful extensions: 157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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