Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14d19
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 40 0.002
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 38 0.006
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 38 0.008
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 36 0.033
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 32 0.31
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 32 0.41
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 30 1.6
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 28 5.0
03_02_0582 + 9624481-9626844 28 6.7
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 478 DDYRSDNSITVIGQDIPSPFVDIEASGFPEYI 573
D YR + +T +G+++P PF+ EA+GFP I
Sbjct: 584 DAYRQHHEVTAVGENVPPPFMTFEATGFPPEI 615
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 442 FYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGIT 603
F + + + YR+ + IT++G + P+PF+ +++GFP I ++ G +
Sbjct: 148 FSEAASGDRTSPEAYRAKHEITIVGNEAPAPFMTFQSTGFPPEILREVQQAGFS 201
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 448 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYI 573
SV ++E + YR ITV G+D+P P + GFPEY+
Sbjct: 61 SVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYV 102
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 484 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGIT 603
YR + ITV+G ++P+P E GFP I ++ G +
Sbjct: 132 YRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFS 171
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 448 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITK 606
+V+ + YR ITV G D+P P + + FP+Y + G +
Sbjct: 126 AVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPDYCMQAIAKSGFVE 178
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 448 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITK 606
SV ++E DY +I V G D+P P GFP + + QG K
Sbjct: 189 SVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEK 241
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 487 RSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQG 597
RS I V G+D+P P + +SG PE + L+ G
Sbjct: 165 RSKLDICVKGEDVPDPIMCFSSSGLPEKLVLNLEAAG 201
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 372 GSIFYIAQSNIKRYKTTRATNLKIL 446
GSIFY++Q KT R T LKIL
Sbjct: 414 GSIFYLSQDERFVIKTLRKTELKIL 438
>03_02_0582 + 9624481-9626844
Length = 787
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 573 YIFRKSTGFYVNKRTGYILTNNSNAIITSVIIIFLFLLSFY 451
YIF + T + +R+ Y+L++ + V++ F F L+ +
Sbjct: 559 YIFLRETAYNAYRRSSYVLSHTIVGFPSLVVLSFAFALTTF 599
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,733
Number of Sequences: 37544
Number of extensions: 243915
Number of successful extensions: 402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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