Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d19
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.44 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.44 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 600 DXLHLQKCFYIFRKSTGFYVNKRTG 526
           D ++LQK FY+F +   F V  R G
Sbjct: 531 DMVYLQKYFYLFMEMDRFAVTLRPG 555


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 600 DXLHLQKCFYIFRKSTGFYVNKRTG 526
           D ++LQK FY+F +   F V  R G
Sbjct: 531 DMVYLQKYFYLFMEMDRFAVTLRPG 555


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +1

Query: 331 IVETNVFHTHIIPKVQY-SILHNQILKGTKLRELQIL-RFYSVKTEQKKEDDDYRSDNSI 504
           +V  +V  T  +  V + S + +++ +  ++  +Q+L RF  +  E+ K+D+D   +  +
Sbjct: 309 LVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRFLLI--ERPKKDEDEEEEEEV 366

Query: 505 TVIGQD 522
            V+G++
Sbjct: 367 VVVGRN 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,292
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)