Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d17
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   1.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   2.0  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   3.5  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   3.5  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   4.6  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   8.1  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   8.1  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +1

Query: 355 RFQIQEIIYPARNNNVKLEVELKDSEDHDKIAVAAVLQLSNADITNLLKYIKTRLFENSM 534
           R    E IY       K   E+ + E  DK++ + VL++ ++    LLK+  T  FEN +
Sbjct: 463 RLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLEVISSSRGTLLKF-ATGKFEN-V 520

Query: 535 LKDDL 549
           L  DL
Sbjct: 521 LNSDL 525


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 175 VVDHPQIALAAITSYKKQIEISEFINFLLEALERNAVWLNTLVGNQNNFKCALMVGAG 348
           V DH  I  A +T YK + +  + +N L   L+  +     ++   N     L+ GAG
Sbjct: 296 VEDHSHIVFAQLTHYKNKKDEKKALNLLAWILKLYSYMSLFILFGSNYSDIVLLFGAG 353


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 463 LQLSNADITNLLKYIKTRLFENSMLKDDLLKGK 561
           + L+ AD T +L+++KT + + S + DD +  K
Sbjct: 69  IDLTKADQTEVLQFLKTYVEDESFVGDDFVMPK 101


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 259 LEALERNAVWLNTLVGNQN 315
           +E L+ + +WLNT +G +N
Sbjct: 205 VEYLDHHCIWLNTCIGRRN 223


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -3

Query: 474 AKLQDCGHCYFVVIFRVFQLDF 409
           ++L++C  C++ V+ RV++ +F
Sbjct: 568 SRLRECSFCFYAVLARVYKEEF 589


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 286 IRHYAPVLLKGSL*IHLFRSVFCRMLLQPRLFVGDQLP 173
           + HY P  L GSL +  F  + CR   +  +  G  +P
Sbjct: 671 LHHYLPAHLAGSLLVGAFIQLACRKSFRSPVSAGVPIP 708


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 337 VGAGPNRFQIQEIIYPARNNNVKLEVELKDSEDH-DKIAVAAVLQL 471
           VG G N+FQI  ++   + +   L+ EL+  ED+     +AA+ +L
Sbjct: 169 VGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 82  CVCEFGHTKFFK 47
           CVC FGH  FF+
Sbjct: 146 CVCVFGHAAFFE 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,402
Number of Sequences: 5004
Number of extensions: 46659
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)