Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d16
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.62 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.62 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.62 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +1

Query: 196 YKEKGTEIQENQFQQMSKQLEVFREN 273
           Y  K  ++++N+FQ++++ ++  REN
Sbjct: 306 YMAKRIQMRKNRFQKIAESMKTAREN 331



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 212 VPFSLYFSCSNLCFWI 165
           + F + F C NL +WI
Sbjct: 410 IVFPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +1

Query: 196 YKEKGTEIQENQFQQMSKQLEVFREN 273
           Y  K  ++++N+FQ++++ ++  REN
Sbjct: 306 YMAKRIQMRKNRFQKIAESMKTAREN 331



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 212 VPFSLYFSCSNLCFWI 165
           + F + F C NL +WI
Sbjct: 410 IVFPVCFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +1

Query: 196 YKEKGTEIQENQFQQMSKQLEVFREN 273
           Y  K  ++++N+FQ++++ ++  REN
Sbjct: 245 YMAKRIQMRKNRFQKIAESMKTAREN 270



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 212 VPFSLYFSCSNLCFWI 165
           + F + F C NL +WI
Sbjct: 348 IVFPVCFVCFNLMYWI 363


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +3

Query: 54  INYYMYLN*FLIEYY*QRNNTL*YNTT----KNATPRRCRCNPKTQIGTR 191
           IN ++Y     + Y+    N + YN      +NA    CRC+P     TR
Sbjct: 293 INQWVYPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSPSNPSITR 342


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 248 FDICWNWFSCISVPFSLYFSC 186
           F ICW  F C+++  S   +C
Sbjct: 281 FLICWVPFFCVNIVTSYCKTC 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,094
Number of Sequences: 438
Number of extensions: 3222
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)