Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14d15
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 2.0
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 3.5
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 3.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 4.7
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 25 4.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 6.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 6.2
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 25 6.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.2
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 25 8.2
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 315 ETAIPNPVAQNFFCRKIVQTIYHPHHDSE 401
+ +PN Q F +V TIY P SE
Sbjct: 137 QLVVPNNFQQMFIHHPVVDTIYSPEESSE 165
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 331 LGIAVSQWTTGIMIPRISGSISLTSRQAELLALLQLKH 218
L +++ WT+GI+ RI+ I ++S + LL+L +
Sbjct: 407 LEASINDWTSGILKNRITKGIKISSINSGATMLLKLHY 444
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 483 LSPHGRCCKRCSTPYH 436
L P G CCK CS+ +H
Sbjct: 146 LYPKGGCCKFCSSVHH 161
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.5
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 84 IQNDCRXXXXXLIFFL--FPVK-MFQKSRLSIAFLTLISL-FHKSTA 212
++NDC+ L+FFL P K +FQK +A +T SL K TA
Sbjct: 278 LENDCQFQLSNLVFFLPKSPDKEIFQKILQCLAVVTASSLELRKLTA 324
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 349 FSAGRSSKPFIILITTPRSA*PGTAPGSPVIRSATPFTTAT 471
+S+GR+ P I TP+ A P AP P + P +T T
Sbjct: 213 YSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNT 253
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 452 VALLITGDPGAVPGHADLGVVMR 384
VA+L+ GDP HADL + R
Sbjct: 77 VAMLVVGDPMGATTHADLVIRAR 99
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 138 LEIKRKSINFNYFYNRFECYLRLNIRMLR 52
LEI + I NY Y R E YL + I++ +
Sbjct: 932 LEILAQKILMNYDYERDEVYLMIFIKIFQ 960
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +3
Query: 342 QNFFCRKIVQTIYHPHHDSEIRVTRNCAWVPGDKECYTVYN 464
+N+ + +Q ++ +H E++ NC + D++ ++YN
Sbjct: 204 KNWSDEQFLQYVWSDNHRDEMKTLYNCLYELIDRDKKSIYN 244
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +3
Query: 318 TAIPNPVAQNFFCRKIVQTIYHPHHDSEIRVTRNCAWV 431
T+IP P + R + + HP + + + +C W+
Sbjct: 32 TSIPIPAC---YIRMCITLLVHPEYPTSSNIQESCNWI 66
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 24.6 bits (51), Expect = 8.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 288 GIIIPVVHCET--AIPNPVAQ 344
G IP+VHCET A+P P ++
Sbjct: 439 GTPIPMVHCETCGAVPVPESE 459
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 24.6 bits (51), Expect = 8.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 365 DLPAEKVLSNRIRYRCFAVDHRYNDSSH 282
D+P RY C AVD YN +H
Sbjct: 475 DVPKSYTYDGYDRYGCLAVDSFYNIYNH 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,849
Number of Sequences: 5004
Number of extensions: 34002
Number of successful extensions: 95
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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