Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d15
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006...    29   2.7  
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736...    28   3.5  
05_04_0071 - 17649443-17649508,17649963-17650046,17650664-17650873     28   3.5  
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    28   4.7  
02_05_0621 - 30417044-30417196,30417511-30417586,30418055-304181...    28   4.7  
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    27   8.2  

>05_04_0224 -
           19198722-19198835,19198947-19199436,19200478-19200641,
           19202534-19202632,19204069-19204175,19204278-19204401,
           19205113-19205242,19205314-19205433,19205861-19206002,
           19207243-19207326,19207651-19207742,19207855-19207944,
           19208057-19208136,19208312-19208451,19208587-19209067
          Length = 818

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
 Frame = +3

Query: 288 GIIIPVVHCETAIPNPVAQ---NFFCRKIVQTIYHPHH-DSEIRVTRNCAWVPGDK---- 443
           G + P+V    A P P      N    +I   +   HH D  ++V +   W  G+K    
Sbjct: 679 GEVFPLVVYAEACPPPEESHQPNSTRAQITLAVIEKHHNDLRVKVVKQMLWSDGEKYELQ 738

Query: 444 ECYTVYNSDHAEI 482
           E Y + NS  A++
Sbjct: 739 EIYGIVNSTEADV 751


>08_02_1458 -
           27270834-27271320,27271752-27271961,27272627-27273624,
           27274099-27274195,27274278-27274393,27274465-27274590,
           27275123-27275233,27275347-27275428,27275844-27275989,
           27276457-27276650,27277277-27277388,27277869-27278001,
           27278295-27278437,27278488-27278562,27278830-27278937,
           27279072-27279197,27279752-27279836,27280358-27280440,
           27280545-27280625,27280709-27280789,27281960-27282034,
           27282112-27282498,27282902-27283036
          Length = 1396

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 267 DIDPEMRGIIIPVVHCETAIPNPVAQN 347
           D+D  ++G+   V+HC   IP P  +N
Sbjct: 571 DLDATLKGLFQQVLHCLENIPKPQGEN 597


>05_04_0071 - 17649443-17649508,17649963-17650046,17650664-17650873
          Length = 119

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 334 GLGIAVSQWTTGIMIPRISGSISLTS 257
           GLG + S+ TT  ++PR+   ISLT+
Sbjct: 87  GLGFSTSKLTTIEIVPRVENGISLTT 112


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 476 RMVAVVNGVALLITGDPGAVPGHADLGVVMRMINGLDDLP 357
           + +A +NGVA+   G PG +P   D   + ++I+ L  LP
Sbjct: 316 KKLAELNGVAVAAAGKPGLLPAKVDHD-LKQVISELQSLP 354


>02_05_0621 -
           30417044-30417196,30417511-30417586,30418055-30418157,
           30418269-30418339,30418446-30418789,30419867-30420004,
           30420089-30420151,30420392-30420489,30421049-30421179,
           30422397-30422428
          Length = 402

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 488 THYLRMVAVVNGVALLIT---GDPGAVPGHADLGVVMRMINGLDDLPAEKVL 342
           TH  R+++  + +A  I    GDP    GH+ L  + +    L +LP  K+L
Sbjct: 193 THACRIISAKSTLAARIDSIRGDPTGKAGHSLLEEICKKTEKLQELPPAKIL 244


>02_03_0300 +
           17454622-17455402,17455535-17456977,17457015-17457317,
           17458429-17458519,17458623-17459757,17459998-17460077,
           17460449-17460533,17460614-17460705,17461079-17461147,
           17461227-17461263,17461351-17461433,17461695-17461840,
           17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 220 ASTVIAPITQLVWTLTISILKCE 288
           A   I P+T L+W L +++ KCE
Sbjct: 785 AEVKIDPVTNLMWNLLMALDKCE 807


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,897
Number of Sequences: 37544
Number of extensions: 209487
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)