Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d14
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    48   1e-06
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   5.9  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   5.9  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 32/127 (25%), Positives = 52/127 (40%)
 Frame = +1

Query: 304 QKEYFTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXX 483
           Q   F+LSR +R                      PVL+L+ RKF                
Sbjct: 56  QSSEFSLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFA 115

Query: 484 XXYGPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFWMMM 663
              G  AH + + + ER   T  Y +TL+AT+   + ++ST  +IV  VL +++    ++
Sbjct: 116 IVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILSFVAYLI 175

Query: 664 GSIPGGS 684
              P G+
Sbjct: 176 AFFPFGT 182


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 513 VNVLKGKSSYNINLQYNFDSDIILCLTSSKYTVDHSMCCLTSHGIVLDDDGVY 671
           V+ L  +S + +  ++   SD  L  T+    ++ ++C     GI   D+G Y
Sbjct: 390 VSGLPLRSFHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTGIANTDNGAY 442


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 67  CNPNCFEGVNYIYPY-IYTQ*VQRNK-KMANLKSDLDQYLLQNESRRSYKFSLPSFS 231
           C  + F+G+NY+  Y  YT+  +  +  +  L+S  D+ LL  +     + SL S +
Sbjct: 584 CIDDSFDGINYVLSYEDYTKETEHERLVVTRLRSVWDRVLLLEQFTPENQLSLRSMA 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,410
Number of Sequences: 5004
Number of extensions: 52225
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)