Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d14
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0835 + 6524532-6524648,6524748-6524801,6525528-6525601,652...    36   0.030
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279...    33   0.16 
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381...    30   2.0  
07_03_1743 - 29167078-29167290,29167389-29168159                       28   6.0  
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173...    28   8.0  

>01_01_0835 +
           6524532-6524648,6524748-6524801,6525528-6525601,
           6525795-6525912,6526008-6526070
          Length = 141

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 493 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 654
           GP   L+ M    R   T+IY   +   L  AL + S   T++  + ++ ALFW
Sbjct: 88  GPSQQLRMMLDPVRVYATAIYGGFVFLALIFALWIHSKVLTLIAIICEICALFW 141


>06_02_0060 -
           11026885-11026929,11027732-11027756,11027886-11027992,
           11028023-11028103,11028301-11028405,11031495-11031762,
           11031854-11032056
          Length = 277

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 25/96 (26%), Positives = 42/96 (43%)
 Frame = +1

Query: 400 YIPVLLLQARKFAXXXXXXXXXXXXXXXXXYGPWAHLKSMFSKERALTTSIYSITLIATL 579
           ++PV+++  +KFA                  GP +    M S ER   T      ++ T+
Sbjct: 114 FLPVMVIMPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTI 173

Query: 580 YCALHLQSTPWTIVCAVLQVMALFWMMMGSIPGGSS 687
           Y ++ L S   +++ +VLQ    F+  M  IP  SS
Sbjct: 174 YVSMFLHSYFLSVIFSVLQ----FFDSMMPIPPTSS 205


>03_02_0800 +
           11337206-11337532,11337634-11337957,11338060-11338194,
           11338280-11338519
          Length = 341

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 211 IYNSDDFRFEANIDLNLILDLPFSCFFALIGCKCTGKYNLRPQNNLGY 68
           +Y   D +   NID   + +LP   F+A++ C C   ++  PQ  +GY
Sbjct: 117 VYLDADIQVFDNIDE--LFELPKGHFYAVMDCFCEKTWSHTPQYQIGY 162


>07_03_1743 - 29167078-29167290,29167389-29168159
          Length = 327

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 211 IYNSDDFRFEANIDLNLILDLPFSCFFALIGCKCTGKYNLRPQNNLGY 68
           +Y   D +   NID   + DL    F+A+  C C   ++  PQ ++GY
Sbjct: 112 VYLDADIQVFDNIDH--LFDLDKGAFYAVKDCFCEKTWSHTPQYDIGY 157


>10_08_0410 -
           17716370-17716743,17716839-17716939,17717104-17717300,
           17717392-17717677,17717768-17718004,17718226-17718281,
           17720042-17721226
          Length = 811

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 184 EANIDLNLILDLPFSCFFALIGCKCTGKYNLRPQNN 77
           +A +  +L+ D P SC F LIG    GK ++  + N
Sbjct: 677 KAGLLTHLLNDEPLSCAFCLIGKMVNGKKSIEHRGN 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,476
Number of Sequences: 37544
Number of extensions: 289706
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)