Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14d13
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70034-6|CAA93850.1| 301|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U41264-6|AAA82426.1| 437|Caenorhabditis elegans Hypothetical pr... 32 0.27
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 1.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 1.9
U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter... 29 1.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 1.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 1.9
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 2.5
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 2.5
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF016412-1|AAB65254.1| 151|Caenorhabditis elegans Hypothetical ... 29 3.3
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 29 3.3
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 28 4.4
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 28 4.4
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 28 4.4
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 28 4.4
AC006619-1|AAK68255.1| 241|Caenorhabditis elegans Hypothetical ... 28 4.4
U29244-13|AAC71083.1| 291|Caenorhabditis elegans Collagen prote... 28 5.8
AL132858-4|CAB60479.2| 338|Caenorhabditis elegans Hypothetical ... 28 5.8
AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical ... 28 5.8
AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain p... 28 5.8
AF381627-1|AAL12000.1| 332|Caenorhabditis elegans homeodomain p... 28 5.8
Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical p... 27 7.7
Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z35597-4|CAA84647.2| 548|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical... 27 7.7
>Z70034-6|CAA93850.1| 301|Caenorhabditis elegans Hypothetical
protein C18E9.6 protein.
Length = 301
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +2
Query: 365 PSGAVSPGLLRHIHNAARYRLPQCFEGACVSVNQNSNTNWVLGHSLSFSSVSPGGYKVLL 544
P +PG +H AR P CFEGA + VN+ ++++ + H+LS S+++ GY+
Sbjct: 12 PIPQTNPGSYEELHRKARDVFPTCFEGAKLMVNKGLSSHFQVSHTLSLSAMNT-GYRFGA 70
Query: 545 SYI 553
+Y+
Sbjct: 71 TYV 73
>U41264-6|AAA82426.1| 437|Caenorhabditis elegans Hypothetical
protein F10E7.10 protein.
Length = 437
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 140 IYAKSNPCSEANSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAK 277
+YA S+ + S +S++PP+ DAP KC S+ + K
Sbjct: 118 VYADSHVMKDIESTLDISEAPPLQLSPQFDAPVMPKCNYSIRKQGK 163
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 206 SVDFVILFL-VNSLRNKDYFLHKYVQKYQILTLWIVKKICFVLDPFVYNY 60
SV ++L L V+++ + + ++ QKYQ+ +W K +VLDP V+ +
Sbjct: 159 SVGSILLILNVDNIEYQSQWKKEFFQKYQLNFIWCPK--YYVLDPTVWEF 206
>Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical
protein F27E5.3 protein.
Length = 490
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 167 EANSPRK-VSQSPPIDKCAGGDAPPQRKCTCSVSEDAKSTAGNRGKTGAGVTGSRTGHAS 343
+ + P+K + +SP K APP +S +T+G G +G+ T +
Sbjct: 254 KTSPPKKPLEESPEKKKMKDDLAPPAAISFSKLSPSTVTTSGPSTVDTTGSSGNSTDPTT 313
Query: 344 EKDSDNLPSG 373
++ N+PSG
Sbjct: 314 RSNTSNVPSG 323
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Frame = +2
Query: 146 AKSNPCSEANSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAKSTAGN-RGKTGAGVTG 322
A NP A++P + PP C GG P G+ G +G G G
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 323 SRTGHASEKDSDNLPSGAVSPG 388
G A +D P PG
Sbjct: 187 P-PGPAGPAGNDGAPGAPGGPG 207
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Frame = +2
Query: 146 AKSNPCSEANSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAKSTAGN-RGKTGAGVTG 322
A NP A++P + PP C GG P G+ G +G G G
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 323 SRTGHASEKDSDNLPSGAVSPG 388
G A +D P PG
Sbjct: 187 P-PGPAGPAGNDGAPGAPGGPG 207
>U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 17 protein.
Length = 352
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 287 GNRGKTG-AGVTGSRTGHASEKDSDNLPSGAVSPGLLRHIHNAARY-RLPQCFEGACVSV 460
G+RG TG AG G R G EK D A SPG A+Y PQ A VS
Sbjct: 288 GDRGATGIAGPPGER-GPQGEKGDDGPNGAAGSPGEEGEPGQDAQYCPCPQRNTNAAVSG 346
Query: 461 NQ 466
NQ
Sbjct: 347 NQ 348
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Frame = +2
Query: 146 AKSNPCSEANSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAKSTAGN-RGKTGAGVTG 322
A NP A++P + PP C GG P G+ G +G G G
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 323 SRTGHASEKDSDNLPSGAVSPG 388
G A +D P PG
Sbjct: 187 P-PGPAGPAGNDGAPGAPGGPG 207
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Frame = +2
Query: 146 AKSNPCSEANSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAKSTAGN-RGKTGAGVTG 322
A NP A++P + PP C GG P G+ G +G G G
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 323 SRTGHASEKDSDNLPSGAVSPG 388
G A +D P PG
Sbjct: 187 P-PGPAGPAGNDGAPGAPGGPG 207
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +2
Query: 65 YKQMDQEQNKFSLLSKVLKFG--IFEHIYAKSNPCSEANSPRKVSQS--PPIDKCAGGDA 232
YK + + + +L LKF ++ H++ N + +P P C GD
Sbjct: 2026 YKYRSESEFRSALSCGKLKFNFKVYTHLWFMGNLLPTSYNPDSHDDKLFVPCSGCTSGDV 2085
Query: 233 PPQRKCTCSVSEDAKS 280
KCTC+ D S
Sbjct: 2086 IIIHKCTCAYHNDTFS 2101
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +2
Query: 65 YKQMDQEQNKFSLLSKVLKFG--IFEHIYAKSNPCSEANSPRKVSQS--PPIDKCAGGDA 232
YK + + + +L LKF ++ H++ N + +P P C GD
Sbjct: 2026 YKYRSESEFRSALSCGKLKFNFKVYTHLWFMGNLLPTSYNPDSHDDKLFVPCSGCTSGDV 2085
Query: 233 PPQRKCTCSVSEDAKS 280
KCTC+ D S
Sbjct: 2086 IIIHKCTCAYHNDTFS 2101
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +2
Query: 65 YKQMDQEQNKFSLLSKVLKFG--IFEHIYAKSNPCSEANSPRKVSQS--PPIDKCAGGDA 232
YK + + + +L LKF ++ H++ N + +P P C GD
Sbjct: 2026 YKYRSESEFRSALSCGKLKFNFKVYTHLWFMGNLLPTSYNPDSHDDKLFVPCSGCTSGDV 2085
Query: 233 PPQRKCTCSVSEDAKS 280
KCTC+ D S
Sbjct: 2086 IIIHKCTCAYHNDTFS 2101
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 28.7 bits (61), Expect = 3.3
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Frame = +2
Query: 125 GIFEHIYAKSNPCSEANSPRKVSQSPPIDKCAGGDA--PPQRKCTCSVSEDAKSTAG--N 292
GI E+I + S A + + ++ P + A A P R+ +V++D K+ N
Sbjct: 24 GINENIDTSTFSVSAAKALFESAKRPEVRNAAIAAAKNPFVRQTAKNVAQDEKARGAVLN 83
Query: 293 RGKTGAGVTGSRTGHA---SEKDSDNLPS-----GAVSPGLLRHIHNAARYRLPQCFEGA 448
K +G A + + SD++P G SPG L H+A R +L G
Sbjct: 84 AVKDPSGGNKISAAFAVADANRKSDSVPPPPPHRGGTSPGKLSGSHSAIRSQLENMHIGG 143
Query: 449 CVSVNQNSNTNWVLGHSLSFSSVS 520
V ++ NS+T S S SS S
Sbjct: 144 SV-MSSNSSTATPSYQSNSTSSYS 166
>AF016412-1|AAB65254.1| 151|Caenorhabditis elegans Hypothetical
protein F25A2.1 protein.
Length = 151
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 551 CMTIALYSHQAKPS*TIVSDPTPNWCSSF 465
CM++A + Q KP T+ D + CS F
Sbjct: 44 CMSLAFQNFQVKPQITVACDTLDDTCSGF 72
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 173 NSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAKSTAGNRGKTGA----GVTGSR 328
N R+V +K D KCTCS + K G++G GA G+ GSR
Sbjct: 48 NISREVGSVVLEEKRGKRDYTEASKCTCSSTISQKCPPGSKGAPGADGLDGIPGSR 103
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 146 HKYVQKYQILTLWIVKKICFVLDPFVYNYSNYFLIYG 36
+KY Q+Y ++ ++ I F++ P N + LIYG
Sbjct: 137 NKYEQRYVVMAGGLISGIAFMIAPASPNIYVFMLIYG 173
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 146 HKYVQKYQILTLWIVKKICFVLDPFVYNYSNYFLIYG 36
+KY Q+Y ++ ++ I F++ P N + LIYG
Sbjct: 82 NKYEQRYVVMAGGLISGIAFMIAPASPNIYVFMLIYG 118
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 146 HKYVQKYQILTLWIVKKICFVLDPFVYNYSNYFLIYG 36
+KY Q+Y ++ ++ I F++ P N + LIYG
Sbjct: 137 NKYEQRYVVMAGGLISGIAFMIAPASPNIYVFMLIYG 173
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +2
Query: 212 KCAGGDAPPQRKCTCSVSEDAKSTAGNRGKTGAGVTGSRTGHASEKDSDNL 364
K GG QRK V S N T G G R G S+ D D L
Sbjct: 530 KAGGGGGQNQRKKRDMVENLYDSLTDNFVPTDTGRRGRRRGRGSDDDEDEL 580
>AC006619-1|AAK68255.1| 241|Caenorhabditis elegans Hypothetical
protein C46C11.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = -1
Query: 224 LRHIYQSVDF------VILFLVNSLRNKDYFLHKYVQKYQILTLWIVKKIC 90
L+H Y+S F VIL N L ++ H+Y+ K + L++V +C
Sbjct: 109 LQHYYRSQAFMGCFGAVILLCTNVLAVYTFYHHRYMYKRAVAALYLVVAMC 159
>U29244-13|AAC71083.1| 291|Caenorhabditis elegans Collagen protein
74 protein.
Length = 291
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 152 SNPCSEANSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAKS-TAGNRGKTGA-GVTG 322
++P + + P V P + GG+ P C C + AG +G G+ G+ G
Sbjct: 49 ASPMNPGSFPGVVGVPPQFNPTQGGEPNPGGSCNCQADNSCPAGPAGPKGAQGSDGIDG 107
>AL132858-4|CAB60479.2| 338|Caenorhabditis elegans Hypothetical
protein Y113G7A.6b protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 239 QRKCTCSVSEDAKSTAGNRGKTGAGVTGSRTGHASEKDS 355
Q+K T + S + +GN G TG G + TG + S
Sbjct: 203 QQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSS 241
>AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical
protein Y113G7A.6a protein.
Length = 391
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 239 QRKCTCSVSEDAKSTAGNRGKTGAGVTGSRTGHASEKDS 355
Q+K T + S + +GN G TG G + TG + S
Sbjct: 256 QQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSS 294
>AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 372
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 239 QRKCTCSVSEDAKSTAGNRGKTGAGVTGSRTGHASEKDS 355
Q+K T + S + +GN G TG G + TG + S
Sbjct: 237 QQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSS 275
>AF381627-1|AAL12000.1| 332|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 332
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 239 QRKCTCSVSEDAKSTAGNRGKTGAGVTGSRTGHASEKDS 355
Q+K T + S + +GN G TG G + TG + S
Sbjct: 197 QQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSS 235
>Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical
protein F08H9.12 protein.
Length = 320
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 218 HIYQSVDFVILFLVNSLRNKDYFLHKYVQKYQILTLWIVKKICFVL 81
H+ Q + ++LFL+ + Y L QI L +VKK+ VL
Sbjct: 106 HVIQQIIHILLFLLAIANSIKYLLTLKFSNSQIFLLNLVKKLNVVL 151
>Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical
protein ZK673.11b protein.
Length = 338
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 143 YAKSNPCSEANSPRKVSQSPPIDKCAGGDAPP 238
Y S+P + + S ++ PPI + D+PP
Sbjct: 57 YGSSSPSTSSGSDSRIQLLPPILSSSSSDSPP 88
>Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical
protein ZK673.11a protein.
Length = 347
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 143 YAKSNPCSEANSPRKVSQSPPIDKCAGGDAPP 238
Y S+P + + S ++ PPI + D+PP
Sbjct: 57 YGSSSPSTSSGSDSRIQLLPPILSSSSSDSPP 88
>Z35597-4|CAA84647.2| 548|Caenorhabditis elegans Hypothetical
protein C36E8.4 protein.
Length = 548
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 440 EGACVSVNQNSNTNWVLGHSLS---FSSVSPGGYKVLLSYI 553
EG CV V +W++GH +S SS+ P + +Y+
Sbjct: 504 EGQCVLVEDRIGDDWLIGHVISQHDNSSIDPRSGRFPTTYV 544
>AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical
protein Y38E10A.28 protein.
Length = 397
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 122 ILTLWIVKKICFVLDPFVYNYSNYFL 45
ILT++ + +CF FVYNY +++
Sbjct: 42 ILTVFYCQTVCFGWAGFVYNYRRWYI 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,062
Number of Sequences: 27780
Number of extensions: 284501
Number of successful extensions: 1122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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