Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d12
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   2.9  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   9.0  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   9.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.0  

>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 200 NSEFAYHGSRQEISNPVQNWKQMWKGYQKAD 292
           NS+  + G ++ I  PV +WK  WK  + A+
Sbjct: 411 NSKLGWDGLKKNIKTPVIHWKD-WKVIRNAE 440


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 81  NSSKNSDEYTKPDNGRGSKSKKSKMAQNTATGTFSNIITQ 200
           NS+++S E    +NG   +++ S  A NT +  FS + +Q
Sbjct: 297 NSNQSSSERPTANNGAQEQNQSSSSAGNT-SNDFSTLCSQ 335


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 410 QLNWFSFSKLIRKPRPWGHF 351
           Q +W++  + IRK  P+GH+
Sbjct: 554 QEDWYAKKERIRKSSPYGHY 573


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 177 YQLLYSEPFYFFSTYYPC 124
           +  L+++PF+ FS Y PC
Sbjct: 279 HAFLFNKPFFDFSFYSPC 296


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 300  KLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 404
            K+ QLE TI  + K+L+            T+T+P+
Sbjct: 1691 KITQLEETIENLNKQLSNPEKTDESTSSVTETKPV 1725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,860
Number of Sequences: 5004
Number of extensions: 48137
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)