Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d12
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +I+F+ +  + TI++L++ PH+
Sbjct: 531 LIIFTLFTIIATIAVLLSAPHI 552


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 8   RFYHNAFATSCLFRYLS 58
           RF    F TSC F YL+
Sbjct: 187 RFVPEGFLTSCSFDYLT 203


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 334 IPIIVFSNWANLGTISLLITFPHLF 260
           + + +F      GTI +L+  PH+F
Sbjct: 481 LQLYIFFLVTTAGTIGILMDAPHIF 505


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +2

Query: 158 SEYSNWYIFEHNHTNSEFAY 217
           + Y+ WY+ +HN       Y
Sbjct: 202 ANYTGWYLTKHNVPEQRLNY 221


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +2

Query: 158 SEYSNWYIFEHNHTNSEFAY 217
           + Y+ WY+ +HN       Y
Sbjct: 202 ANYTGWYLTKHNVPEQRLNY 221


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 237 ISCLDPW 217
           +SC+DPW
Sbjct: 328 VSCIDPW 334


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 437 LIVFTLFTVLATIVILCRAPHI 458


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 437 LIVFTLFTVLATIVILCRAPHI 458


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 437 LIVFTLFTVLATIVILCRAPHI 458


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 437 LIVFTLFTVLATIVILCRAPHI 458


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 437 LIVFTLFTVLATIVILCRAPHI 458


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 437 LIVFTLFTVLATIVILCRAPHI 458


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 505 LIVFTLFTVLATIVILCRAPHI 526


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 IIVFSNWANLGTISLLITFPHL 263
           +IVF+ +  L TI +L   PH+
Sbjct: 505 LIVFTLFTVLATIVILCRAPHI 526


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 237 ISCLDPW 217
           +SC+DPW
Sbjct: 328 VSCIDPW 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,847
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)