Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d09
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    35   0.008
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    36   0.019
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    33   0.13 
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    30   1.6  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    29   2.1  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    29   2.1  
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    29   3.8  
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    29   3.8  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    29   3.8  
U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin fam...    28   6.6  
AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    28   6.6  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
 Frame = +2

Query: 335 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDRELYASVPYY 514
           L  LGCCGA +E  C+ +++                  +   +     +  +L   +  Y
Sbjct: 66  LGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRY 125

Query: 515 GVKHEYTKSWDDTQTYLQCCGVKSPNDW--HGNLPESCCREAYPG 643
                   +WD T    +CCGV + +DW     +P+SCC E   G
Sbjct: 126 HESRGVESAWDKTHQLFECCGVTNSSDWLTFTTIPDSCCIEEIEG 170


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
 Frame = +2

Query: 497 ASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPNDWH------GNL--PESCC 625
           A V   G + + + +WD  Q  LQCCGV +  DWH       NL  P+SCC
Sbjct: 122 AVVTKIGREIKLSLTWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCC 172


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 35.1 bits (77), Expect(2) = 0.008
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +2

Query: 347 GCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDRELYASVPY-YGVK 523
           GC GA K  +C L  +                  F  +E +   ++  +Y ++   Y  +
Sbjct: 74  GCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYSSE 133

Query: 524 HEYTKSWDDTQTYLQCCGVKSPNDW 598
             +  ++D  Q   +CCGVK+  DW
Sbjct: 134 TAFKDAFDTVQEKFECCGVKTYTDW 158



 Score = 21.4 bits (43), Expect(2) = 0.008
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 599 HGNLPESCCRE 631
           +G +P SCC E
Sbjct: 196 YGRVPSSCCNE 206


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
 Frame = +2

Query: 152 GRCMKFSLICINVITXXXXXXXXXXXXWVWTSRSFSSTLMSNNMFIASXXXXXXXXXXXX 331
           GR +KFS I   +I+            W+   RS  + L+S ++++              
Sbjct: 13  GRLIKFSYIVTALISILFSISCICYGIWLLARRSQYAELVSPSLYV-DVGRILVIISILS 71

Query: 332 XLSLLGCCGAA-KEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFRE----------KVLTT 478
            L+ L C  A  KE++C + +                     FR+          K+LT+
Sbjct: 72  ILNYLICFYAIFKEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTS 131

Query: 479 LDRELYASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPND 595
           L RELY +    G+    T+SWD  Q+  +CCGV   ++
Sbjct: 132 L-RELYGTHDMKGI----TESWDALQSNFKCCGVNGTDN 165


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 3/164 (1%)
 Frame = +2

Query: 125 GMGGAMD-SCGRCMKFSLICINVITXXXXXXXXXXXXWVWTSRSFSSTLMS--NNMFIAS 295
           G GG  + SC  C+K+S+   NVI             W    ++    ++S  + +++  
Sbjct: 27  GAGGESEISC--CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDP 84

Query: 296 XXXXXXXXXXXXXLSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLT 475
                        +   GC G+ +E    L  Y                  +  R+++  
Sbjct: 85  TWPLLIVGFLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDN 144

Query: 476 TLDRELYASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPNDWHGN 607
            +   L   V  Y    +     D  Q    CCG+   +DW  N
Sbjct: 145 YIRNLLNDVVVGYRDDPDLQLLIDSMQETWMCCGINGADDWDRN 188


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
 Frame = +2

Query: 335 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDRELYASVPYY 514
           +  LG CGA    + +LL +                    +++KV +  +         Y
Sbjct: 40  VGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLSLFYKDKVYSVKENVREIVKSKY 99

Query: 515 GVKHE------YTKSWDDTQTYLQCCGVKSPNDW 598
           GV          T+  D  Q Y +CCG   P D+
Sbjct: 100 GVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDY 133


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 337 EDHYGDSHGHDHADRRYEHVVAH 269
           +DH  DSHGH H    ++H  +H
Sbjct: 377 DDHGHDSHGHSHDHNEHDHGHSH 399


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 337 EDHYGDSHGHDHADRRYEHVVAH 269
           +DH  DSHGH H    ++H  +H
Sbjct: 395 DDHGHDSHGHSHDHNEHDHGHSH 417


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 335 LSLLGCCGAAKEVKCMLLTY 394
           ++ LGCCGAAKE + +L  Y
Sbjct: 96  VAFLGCCGAAKEWRPLLCCY 115


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
 Frame = +2

Query: 335 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVFREKVLTTLDREL-YASVPY 511
           +++LGCCG     +  L+ Y                     ++ +   L   L Y    Y
Sbjct: 127 VAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYMVQHY 186

Query: 512 YGVKHEYTKSWDDTQTYLQCCGVKSPND---WHGNLPESC 622
           Y       +S D  QT  +CCG    +D   +  ++P SC
Sbjct: 187 YQGPGVVQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 316 HGHDHADRRYEHVVAHQRA*ERTRRP 239
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 316 HGHDHADRRYEHVVAHQRA*ERTRRP 239
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin family
           protein 10 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 542 WDDTQTYLQCCGVKSPNDW 598
           W +TQ    CCGV +  DW
Sbjct: 154 WANTQDLFGCCGVYNSTDW 172


>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 183 IHIRENFMHLPQLSIAPPIPITL 115
           I I+ NF HLP +S   P P T+
Sbjct: 475 IRIKSNFRHLPDISFLKPNPDTI 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,240
Number of Sequences: 27780
Number of extensions: 271768
Number of successful extensions: 625
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)