Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14d06
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 219 1e-57
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 219 1e-57
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 29 1.5
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 6.1
Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 27 8.0
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 27 8.0
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 27 8.0
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 27 8.0
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 219 bits (534), Expect = 1e-57
Identities = 100/163 (61%), Positives = 124/163 (76%)
Frame = +1
Query: 22 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 201
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 202 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 381
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 382 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGK 510
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVK 163
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 219 bits (534), Expect = 1e-57
Identities = 100/163 (61%), Positives = 124/163 (76%)
Frame = +1
Query: 22 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 201
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 202 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 381
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 382 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGK 510
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVK 163
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 511 PCPSSCLQAYEQHHGISIQFHGTVCLHD 428
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 508 CPSSCLQAYEQHHGISIQFHGTVCLHDSNY 419
C S L +E HHGI + G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 486 LTNNITVFPSNFMGQSAYMTVITARFQTE 400
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
>Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical
protein F25D1.5 protein.
Length = 277
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 16 MTGFSNKAIVIDGRGHLLGRLAAVI 90
M FS K+++I G + +GR AAVI
Sbjct: 1 MARFSGKSVIITGSSNGIGRSAAVI 25
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 335 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 159
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 158 LPEMLI 141
LPE +
Sbjct: 210 LPEWTV 215
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 335 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 159
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 158 LPEMLI 141
LPE +
Sbjct: 210 LPEWTV 215
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 335 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 159
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 158 LPEMLI 141
LPE +
Sbjct: 210 LPEWTV 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,129,870
Number of Sequences: 27780
Number of extensions: 249190
Number of successful extensions: 642
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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