Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d05
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   0.73 
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   2.2  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    27   2.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.2  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 137 KIIASKQISKDASTKSKTCSESAVSTKSVIK--PKKTAKSDSNFASN 271
           ++I   +  K++S++S + SES    ++V+K   KK + SDS+  S+
Sbjct: 125 EVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESS 171


>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 342 KKIINITYFILLKATENTIKMKRYRPSSNSTKTLISNNQRHLSAMNETTTKTIW 503
           K +  +T  I  + T +T  M+    S +STK+L+S     L  +++    +IW
Sbjct: 46  KSLKELTMNIGTEITSSTKLMESMNDSFDSTKSLLSGTMTRLKNVSKNGGISIW 99


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 270 INALLCPLVSARNVVIL*TLIQAAKKIINI 359
           +  LLC ++ ARNV ++ T   AAK+ I I
Sbjct: 153 VGLLLCQMLRARNVHVIATASTAAKRRIAI 182


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 255 ESDFAVFFGFITDFVLTALSEHVLDFVEASLDICFEAIIFLGRRQHFWVLS 103
           E+D  V + F  D V   L +H LD +  +  +  +   F G+RQ   + S
Sbjct: 214 ENDRGVSYTFGADVVSRFLQKHDLDLICRAHQVVEDGYEFFGKRQLVTIFS 264


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 221  VIKPKKTAKSDSNFASNKCPTMPISICEKCGD 316
            +++ +  AKSD   +S+      I +CE+C D
Sbjct: 1315 LLRRRLCAKSDDETSSSSSFATDIEMCEQCND 1346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,442
Number of Sequences: 5004
Number of extensions: 37560
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)