Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14d05
(523 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12775-1|AAB61247.1| 132|Homo sapiens agouti precursor protein. 31 3.2
BC104239-1|AAI04240.1| 132|Homo sapiens agouti signaling protei... 31 3.2
BC104238-1|AAI04239.1| 132|Homo sapiens agouti signaling protei... 31 3.2
AL035458-3|CAB96679.1| 132|Homo sapiens agouti signaling protei... 31 3.2
U72899-1|AAD00183.1| 194|Homo sapiens LIM protein MLP protein. 29 7.5
U72898-1|AAD00189.1| 194|Homo sapiens LIM protein MLP protein. 29 7.5
U49837-1|AAA92571.1| 194|Homo sapiens LIM protein MLP protein. 29 7.5
U20324-1|AAA91104.1| 194|Homo sapiens LIM domain protein protein. 29 7.5
EF179182-1|ABN05285.1| 194|Homo sapiens cysteine and glycine-ri... 29 7.5
BC057221-1|AAH57221.1| 194|Homo sapiens cysteine and glycine-ri... 29 7.5
BC024010-1|AAH24010.1| 194|Homo sapiens cysteine and glycine-ri... 29 7.5
BC005900-1|AAH05900.1| 194|Homo sapiens cysteine and glycine-ri... 29 7.5
AF121260-1|AAF28868.1| 194|Homo sapiens myogenic factor LIM3 pr... 29 7.5
>U12775-1|AAB61247.1| 132|Homo sapiens agouti precursor protein.
Length = 132
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 149 SKQISKDASTKSKTCSESAVSTKSVIKPKKTAKSDSNFASNKCPTMPISICEKC 310
SKQI + A+ K ++ + A S K V++P+ + N C + C+ C
Sbjct: 59 SKQIGRKAAEKKRSSKKEA-SMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPC 111
>BC104239-1|AAI04240.1| 132|Homo sapiens agouti signaling protein,
nonagouti homolog (mouse) protein.
Length = 132
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 149 SKQISKDASTKSKTCSESAVSTKSVIKPKKTAKSDSNFASNKCPTMPISICEKC 310
SKQI + A+ K ++ + A S K V++P+ + N C + C+ C
Sbjct: 59 SKQIGRKAAEKKRSSKKEA-SMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPC 111
>BC104238-1|AAI04239.1| 132|Homo sapiens agouti signaling protein,
nonagouti homolog (mouse) protein.
Length = 132
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 149 SKQISKDASTKSKTCSESAVSTKSVIKPKKTAKSDSNFASNKCPTMPISICEKC 310
SKQI + A+ K ++ + A S K V++P+ + N C + C+ C
Sbjct: 59 SKQIGRKAAEKKRSSKKEA-SMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPC 111
>AL035458-3|CAB96679.1| 132|Homo sapiens agouti signaling protein,
nonagouti homolog (mouse) protein.
Length = 132
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 149 SKQISKDASTKSKTCSESAVSTKSVIKPKKTAKSDSNFASNKCPTMPISICEKC 310
SKQI + A+ K ++ + A S K V++P+ + N C + C+ C
Sbjct: 59 SKQIGRKAAEKKRSSKKEA-SMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPC 111
>U72899-1|AAD00183.1| 194|Homo sapiens LIM protein MLP protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>U72898-1|AAD00189.1| 194|Homo sapiens LIM protein MLP protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>U49837-1|AAA92571.1| 194|Homo sapiens LIM protein MLP protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>U20324-1|AAA91104.1| 194|Homo sapiens LIM domain protein protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>EF179182-1|ABN05285.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>BC057221-1|AAH57221.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>BC024010-1|AAH24010.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>BC005900-1|AAH05900.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
>AF121260-1|AAF28868.1| 194|Homo sapiens myogenic factor LIM3
protein.
Length = 194
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 71 TSKASYGGCRYDKTQKCCRLPRKIIASKQISKDASTKSKTCSESAVSTKSVIKPKKTAK 247
TS S ++ +++KC R + + A++++ KTC A+ KS+ T K
Sbjct: 104 TSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDK 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,713,287
Number of Sequences: 237096
Number of extensions: 1170310
Number of successful extensions: 2314
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2314
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -