Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d04
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    56   5e-09
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    44   2e-05
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    31   0.12 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.65 
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    27   1.5  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    27   2.6  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   3.5  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   3.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   6.1  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   8.1  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
 Frame = +3

Query: 210 GVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDL-PEQLTV 386
           G PGAG  T A  I    G   +  G++ R +  R T  G+  A+KI     L  + +  
Sbjct: 10  GPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKE-AKKIMDQGGLVSDDIVT 68

Query: 387 DLIKEEMLSQPEAK-GFILVGFPRN----SRMSDIFSRQVKWPEKVVALEVDNEVAAARL 551
            +IK+E+L+ PE K GFIL GFPR      +++ +          V+ L+VD+E+   R+
Sbjct: 69  GMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRRI 128

Query: 552 QNKLSELG 575
             +L   G
Sbjct: 129 TGRLVHPG 136


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
 Frame = +3

Query: 195 VIFVNGVPGAGNQTVAETISD-ITGYNMIRPGELERVEATRDTVR-GRMVAEKIRTLEDL 368
           VIFV G PGAG  T  + +++    +  I  G+  R E  R   + G ++ E I+  + +
Sbjct: 4   VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63

Query: 369 PEQLTVDLIKEEMLSQPEAKG---FILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVA 539
           P ++T+ L++ +M  +   KG   F++ GFPR     + F + V   +  +      E  
Sbjct: 64  PMEITISLLETKM-KECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETM 122

Query: 540 AARLQNKLSELGR 578
             RL ++    GR
Sbjct: 123 LKRLIHRGKTSGR 135


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 183 RRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPGEL 293
           R LP I + G PG G  T+AE +++ T    I  G++
Sbjct: 6   RELPNIIICGTPGTGKTTLAEQVAETTELENICIGDV 42


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 141 DIEVVEDLYDMSPVRRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPG 287
           D+ +   + D S VRR P  FVNGV    N      I D++G  ++  G
Sbjct: 430 DVVLKGSIPDTSSVRRNPPCFVNGVESI-NVDFEARIFDVSGDRLVLAG 477


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 263 RLQHDPAGRTGKS--RGYKGHGQRENGRRKDSNARGST 370
           R+   PA   GK+  RG+KG GQR   R K     G T
Sbjct: 16  RVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQT 53


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 336 VAEKIRTLEDLPEQLTVDLIKEEMLSQPEA 425
           + E +R   DLPE L + L KEE L  P++
Sbjct: 781 IHEVLRLRFDLPENLKLQLNKEEALLPPKS 810


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 195 VIFVNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDLPE 374
           ++ + G+ GAG  T+A  I+   GY ++     +  + T  TV  + V+  I     L  
Sbjct: 418 IMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASD--DRTAHTVHEK-VSSAISNHSALSS 474

Query: 375 QLTVDLIKE 401
           Q T  ++ E
Sbjct: 475 QPTCVIVDE 483


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 IFVNGVPGAGNQTVAETISDITGYNMI 278
           + ++G PG G  T A  ++ + GY+++
Sbjct: 412 VLLSGPPGIGKTTAAHLVAKLEGYDVL 438


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 381 TVDLIKEEMLSQPEAKGFILVG--FPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQ 554
           TV +  +E    P      LV       S + +  S+ ++  EKV ALE D E+    +Q
Sbjct: 512 TVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQ 571

Query: 555 NKLS 566
            ++S
Sbjct: 572 YQIS 575


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = +3

Query: 348 IRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVD 527
           + TL  LP+ + +D  ++EMLS+  A+     G  + ++  D   +Q++   ++  L+  
Sbjct: 143 LETLPALPDAIDMDEDEKEMLSEARARLANTQG--KKAKRKD-REKQLELTRRLSHLQKR 199

Query: 528 NEVAAARLQNKL 563
            E+ AA +  KL
Sbjct: 200 RELKAAGINIKL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,954
Number of Sequences: 5004
Number of extensions: 46269
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)