Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14d01
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    29   4.1  
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    28   7.2  
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624...    28   7.2  
05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352           27   9.5  
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    27   9.5  
01_06_0867 - 32586254-32586574,32586756-32587172                       27   9.5  

>04_03_0036 -
           9950353-9950379,9950753-9950791,9951021-9951194,
           9951287-9951415,9951782-9952012,9952655-9952732,
           9953035-9953055,9953790-9953855,9953935-9954015,
           9954148-9954920,9955461-9955654,9956723-9956817,
           9958190-9958219,9958334-9958453,9959185-9959262,
           9959428-9959505,9960459-9960488,9960614-9960739,
           9961239-9961379,9963416-9963532,9963619-9963670,
           9963759-9963890,9964668-9964720,9964816-9964911,
           9965255-9965260,9965416-9965561,9966494-9966629,
           9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 542 AARIAWMNSSCFCRQLLFNCLPLFTLVVDGVAVVLRNLLIKGSASVPAKRCLSTSKGFLF 363
           AA+  W+++           + L T+V DG  VV R  L+K  ASV +    S    F F
Sbjct: 373 AAKATWLSNDIVMFSTKAGEMLLLTVVYDG-RVVQRLDLMKSKASVLSSAVTSIGNSFFF 431

Query: 362 L 360
           L
Sbjct: 432 L 432


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 406 TEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFIQAIRAAKQVQAHLNAGG 576
           T  E  +N+L K  A  +  +V   +++     QK+ E + AIR AK   +H  A G
Sbjct: 176 TLTEALMNELVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIR-AKNAASHNKASG 231


>07_03_1219 +
           24960043-24960133,24960304-24960336,24962258-24962486,
           24963183-24963309,24963530-24963869,24964806-24965095
          Length = 369

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
 Frame = +1

Query: 136 TNKTRGAMQRPANTTPR-KPPVK----ANSAGSGTPKGRXXXXXXXXXXXXXGDACGVCG 300
           +NKT+ +  R     P+ +PPVK        G    +G                 CG CG
Sbjct: 157 SNKTKSSEPRAKQPKPQPQPPVKNEGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACG 216

Query: 301 RHFASDRIAKHQEICKK 351
             + +D      +IC+K
Sbjct: 217 ESYGADEFWICCDICEK 233


>05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352
          Length = 236

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 233 PLGVPEPALFAFTGGFLGVVLAGRCIAPR 147
           PL  P P+   F  G LG+++    ++PR
Sbjct: 185 PLSPPPPSYHCFRNGPLGIIIIASILSPR 213


>05_01_0334 -
           2642998-2643063,2643125-2643169,2643552-2643617,
           2643625-2643730,2643770-2644349,2645780-2645871,
           2645969-2646035,2646126-2646231,2646628-2646708,
           2646789-2647058,2647158-2648788,2648834-2649385,
           2650602-2651324,2651451-2651526
          Length = 1486

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 301 RHFASDRIAKHQEICKKAHSKK 366
           RHF  +   +H E+C   HSK+
Sbjct: 676 RHFCRNNPGEHTELCSNKHSKR 697


>01_06_0867 - 32586254-32586574,32586756-32587172
          Length = 245

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 136 TNKTRGAMQRPANTTPRKPPVKANSAGSGTPKG 234
           ++K RGA++RPA+    +   +A+SAG G P G
Sbjct: 9   SSKRRGAVERPASGAGLQAE-EASSAGPGAPCG 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,631
Number of Sequences: 37544
Number of extensions: 279872
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)