Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c14
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 709  MNTLKVSKFSMTRFSFVNLLSFVPFSFHSLLFRLSTTSRTIR 584
            + ++  ++  +T   F+NL++FV   F SLL  + T ++ +R
Sbjct: 3750 LKSISRTQVDLTNDEFLNLMNFVLNLFDSLLSSIETATKNMR 3791


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = -1

Query: 721 FF*KMNTLKVSKFSMTRFS---FVN---LLSFVPFSFHSLLFRLSTTSR 593
           FF + N LKV ++ + RFS   +V+   +LSF+PF  H    R+   S+
Sbjct: 104 FFTEKNALKVLEWLIRRFSIHEYVSDEFILSFLPFHDHPFFARILGCSK 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,957
Number of Sequences: 5004
Number of extensions: 38453
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)