Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c14
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0639 - 10047105-10047204,10047315-10047495,10049375-100494...    30   1.7  
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269...    29   3.9  
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660...    28   9.0  

>03_02_0639 -
           10047105-10047204,10047315-10047495,10049375-10049464,
           10050718-10050796,10050887-10051024,10051897-10051977,
           10052079-10052264,10052366-10052458,10052537-10052603,
           10052709-10052798,10052909-10053441
          Length = 545

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 398 LT*VTNKDNREDEVDEVRAGARGRYGVNEVREGEIGRNGE 517
           LT V  +DNR +EV  V   ARG     E   GE+G +G+
Sbjct: 62  LTSVVEEDNRGEEV--VEEEARGSLAAAEAAAGEVGGDGD 99


>12_02_0340 -
           17725866-17725884,17726046-17726326,17726842-17726928,
           17727018-17727113,17728484-17728585,17728720-17728762,
           17728834-17728952,17729348-17729444,17730153-17730214,
           17730370-17730432,17730847-17730949,17731402-17731497,
           17731594-17731742,17732356-17732529,17733078-17733156,
           17733807-17733913,17733994-17734062,17734879-17735043,
           17735206-17735703
          Length = 802

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 428 EDEVDEVRAGARGRYGVNEVREGEIGRNGELVEFEK 535
           ++EV+E+  G +G    +EV EGE G++GE  E E+
Sbjct: 124 DEEVEELEEG-KGEEKSDEVEEGEEGQDGEEEEKEE 158


>10_02_0197 +
           6596197-6596402,6596766-6596828,6599679-6599795,
           6600311-6600545,6600771-6600929,6601159-6601310,
           6602511-6602571
          Length = 330

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 237 SKL**ILPYKFWSGPITCWMVTFE 166
           SK+  + PYK+WS  ITC +  F+
Sbjct: 208 SKVLKVYPYKYWSSMITCLVGGFQ 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,168,560
Number of Sequences: 37544
Number of extensions: 201045
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)