Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c12
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    87   2e-18
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    61   1e-10
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   1.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   2.2  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   2.8  

>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
 Frame = +2

Query: 164 YDEVKDALERLSPFITKTPCMPSHH-QREFTMKLYYKIESMQITGSFKERGSLNVLQLLP 340
           YD+V  A ER+  F  KTP + S    +EF  ++++K E+ Q  G+FK RG+LN L  L 
Sbjct: 10  YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69

Query: 341 LDKKKIGVVIASIGNDAIGICHYGAKLGXXXXXXXXXXXXXCKLQNCYSLGAKVILEGSN 520
             ++K GV+  S GN A  I      LG              K+      G +VI+    
Sbjct: 70  EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129

Query: 521 LTESQRFARSLAKDKGLTYINARDHPHILMG 613
             + ++ A+ +++ +GLT I   DHPH+L G
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHPHVLAG 160


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 37/118 (31%), Positives = 55/118 (46%)
 Frame = +2

Query: 260 LYYKIESMQITGSFKERGSLNVLQLLPLDKKKIGVVIASIGNDAIGICHYGAKLGXXXXX 439
           +Y K E +    SFK RG+ N +  L     K GV+  S GN A G+ +    LG     
Sbjct: 130 VYLKREDLTPVFSFKIRGAHNKMASLDKQSLKNGVIACSAGNHAQGVAYSARTLGVKATI 189

Query: 440 XXXXXXXXCKLQNCYSLGAKVILEGSNLTESQRFARSLAKDKGLTYINARDHPHILMG 613
                    K +N   LGA V+L G+N   ++     LAK++ L  I+  D P+++ G
Sbjct: 190 VMPQNTPEIKWRNVKRLGANVLLHGANFDIAKAECARLAKEQNLEVIHPFDDPYVIAG 247


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = +2

Query: 167  DEVKDALERLSPFITKTPCMPSHHQREFTMKLYYKIESMQITGSFKERGSLNVLQLLPLD 346
            + +K  L+  +  ITKT  + S  + +F   + Y+I   Q++  ++ER  L+ L+L+  D
Sbjct: 956  NSLKYLLDDFTKVITKTFSIKSI-RLQFLSLIIYEITYEQLSSWYRERTILSFLELVSFD 1014

Query: 347  K 349
            +
Sbjct: 1015 Q 1015


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
 Frame = +2

Query: 92  SIVMSRRHEDFDEFCDPENPRPIKYDEVKDALERLSPFITKTPCMPSHHQREFTMKLYYK 271
           S++       F   C  ENP  I+Y+ + + L  + P I      P      + MK  + 
Sbjct: 428 SLISPSPSSQFPVLCTLENPSSIEYNIISNILFSI-PTIPLKNASPIVELISYVMKPEFF 486

Query: 272 IESMQITGSFKE-------------RGSLNVLQLLPLDKKKIGVVIA 373
           ++S Q     K+               +L++++LL  DK+K   +IA
Sbjct: 487 MKSQQNASDCKKLLSSFLYFLINNFNDNLHIIELLQKDKRKFEPIIA 533


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 90  PVSLCLAGTKILMNSVTRRILDQSNMMK 173
           PVSLC+   KI  N +T   +D  N+ K
Sbjct: 297 PVSLCVYPEKITFNWLTEGTVDSCNLCK 324


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 458 ELSQAPRQSLECRAWRRSDIYQWRHC 381
           E+ Q  R  L  + W +  ++QW+ C
Sbjct: 5   EVDQTYRSLLTLKQWEKFSLFQWQEC 30


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +2

Query: 146 NPRPIKYDEVKDALERLSPFITKTPCMPSHHQREFTMKLYYKIESMQITGSFKERGSLNV 325
           +P P + ++   A+ER++  + K P +    +R  TM  Y    S  +  +     +L+ 
Sbjct: 472 SPAPTENEDSNAAIERVANTLRKNPTISRRTRRAGTMDRYATASSDYMESNLGSLPNLST 531

Query: 326 LQL 334
           L L
Sbjct: 532 LSL 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,053
Number of Sequences: 5004
Number of extensions: 50925
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)