Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c12
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381...    69   2e-12
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981...    58   6e-09
09_01_0134 - 2008793-2009315,2009361-2009423,2009804-2010012,201...    28   5.1  
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    27   8.9  

>03_05_0901 +
           28635672-28636094,28637623-28637802,28637903-28638172,
           28638506-28638757,28639205-28639453,28639533-28639606,
           28639798-28639915,28640421-28640555,28640813-28640965
          Length = 617

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 37/120 (30%), Positives = 63/120 (52%)
 Frame = +2

Query: 254 MKLYYKIESMQITGSFKERGSLNVLQLLPLDKKKIGVVIASIGNDAIGICHYGAKLGXXX 433
           + L+ K E +Q   SFK RG+ N++  L  ++ + GV+ +S GN A G+     +LG   
Sbjct: 130 VNLWIKREDLQPVFSFKLRGAYNMMAKLSREQLERGVICSSAGNHAQGVALSAQRLGCDA 189

Query: 434 XXXXXXXXXXCKLQNCYSLGAKVILEGSNLTESQRFARSLAKDKGLTYINARDHPHILMG 613
                      K ++   LGA V+L+G +  E+Q +A+   + +G T+I   DHP ++ G
Sbjct: 190 VIVMPVTTPEIKWRSVERLGATVVLKGDSYDEAQSYAKQRCEQEGRTFIPPFDHPDVISG 249


>04_04_0753 -
           27797298-27797547,27797765-27797951,27798040-27798113,
           27798719-27798949,27799047-27799133,27799244-27799434
          Length = 339

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
 Frame = +2

Query: 173 VKDALERLSPFITKTPCMPSHHQREFTMK-LYYKIESMQITGSFKERGSLNVLQLLPLDK 349
           +++A  R++P++ KTP + S        K L++K E  Q  G+FK RG+ N +  L  D+
Sbjct: 24  IREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSIFALDDDE 83

Query: 350 KKIGVVIASIGNDAIGICHYGAKLGXXXXXXXXXXXXXCKLQNCYSLGAKVILEGSNLTE 529
              GVV  S GN A  +       G             CK+ N    G  +I    ++  
Sbjct: 84  ASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYGGHIIWSDVSIES 143

Query: 530 SQRFARSLAKDKGLTYINARDHPHILMG 613
            +  A+ + ++ G   ++  ++ + + G
Sbjct: 144 RESVAKRVQEETGAILVHPFNNKNTISG 171


>09_01_0134 -
           2008793-2009315,2009361-2009423,2009804-2010012,
           2010313-2010342,2010430-2010491,2010588-2010771
          Length = 356

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 395 QWRHCLLKLSRRRSSFYLMVTVAKRLVNPSL*NFP 291
           +++HC   +SR+    Y++V + + +V P+  NFP
Sbjct: 274 RFKHCGETISRKFEILYVVVDLGRDIVRPNNPNFP 308


>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 266  YKIESMQITGSFKERGSLNVLQLLPLDKKKI-GVVIASIGNDAIGIC 403
            + +  + I+ +FKER S   L L PL+  ++ G ++     DA  IC
Sbjct: 1105 HAVHDLDISHAFKERHSRQQLSLSPLNVSELAGPILTERNPDARCIC 1151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,163
Number of Sequences: 37544
Number of extensions: 300852
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)