Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14c10
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 31 0.13
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 30 0.23
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.40
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.53
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.53
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.70
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 0.93
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 0.93
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.2
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.1
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 27 2.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.8
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 3.7
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 26 3.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 5.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.7
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 8.7
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 25 8.7
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 459 MELMQDENNRIREEIEALRSKYDALK 536
M+L+ DEN R+RE+I LRS+ L+
Sbjct: 612 MKLIMDENQRLREQIAVLRSRIQHLE 637
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 30.3 bits (65), Expect = 0.23
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 348 KQRRRTLKNRGYAASCRIKRIEQKDELENEKS-QEWHDMELMQDENNRIREEIEALRS 518
KQ +NR A CRIK+ + L+++ + + EL+Q N+ +REEI LR+
Sbjct: 123 KQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKELLQSAND-LREEIIKLRT 179
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.5 bits (63), Expect = 0.40
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 1/145 (0%)
Frame = +3
Query: 129 TKRVTHNQRIDDSKINMPHDLKELGGRKAINMAPLSPTPCAEI-SDDELVSISVRDLNRQ 305
T+ V+ ++ + S IN L R +P SP + S ++ R
Sbjct: 393 TRSVSDHRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTLS 452
Query: 306 LKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENN 485
+ + D + + YAAS +++ I + E + +E + ++ + E++
Sbjct: 453 VNKKQFNADDGSTLNSPNSIRETEEYAASPKLEDIADEVETDATSQRELLERQIQKAESS 512
Query: 486 RIREEIEALRSKYDALKRFATMKSI 560
EIE+L+ K + +T + I
Sbjct: 513 EDTSEIESLQGKLSLPQVSSTQQEI 537
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.53
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +3
Query: 297 NRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQD 476
N Q K+ + D+I+ + T + G A+ + ++Q + + + W D+ + +
Sbjct: 876 NNQKKLEDMNLDEILEHAEDHDTSNDVGGASMGGEEFLKQFEVTDYKADVSWDDIIPLTE 935
Query: 477 -----ENNRIREEIEALRSKYDALKR 539
E +R+REE EAL+ + + R
Sbjct: 936 REKFEEEDRLREEEEALKQEIELSSR 961
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.53
Identities = 23/128 (17%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Frame = +3
Query: 132 KRVTHNQRIDDSKINMPHDLKELGGRKAINMAPLSPTPCAEISDDELVSISVRDLNR--- 302
+++ H +SK++ +LKE+ G+ ++++ L + ISD++ + + +L++
Sbjct: 839 QKLMHKHVNQESKVS---ELKEVNGKLSLDLKNLRSSLNVAISDNDQILTQLAELSKNYD 895
Query: 303 QLKMRGLTRDQ-IVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQE-WHDMELMQD 476
L+ + + ++ ++ L R+ ++ K ++E KS + + Q+
Sbjct: 896 SLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQE 955
Query: 477 ENNRIREE 500
E + ++EE
Sbjct: 956 EISNLKEE 963
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 402 KRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRSK 521
K +++KD+ E + + +EN +I++E+ ALR K
Sbjct: 1085 KLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKK 1124
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.70
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 SDDELVSISVRDLNR-QLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELEN 434
S E++ R L + ++++R L R++ K+R + + + I +K ELE
Sbjct: 411 SQPEVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKYELEK 470
Query: 435 EKSQEWHDMELMQDENNRIREEIE 506
+ E D + DE E+ E
Sbjct: 471 SRGSELQDAKRRLDELKAKAEDAE 494
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 411 EQKDELENEKSQEWHDMELMQDENNRIREEIE 506
E K+E + EK + D E +ENN + E+I+
Sbjct: 4115 ENKEEADAEKDEPMQDFEDPLEENNTLDEDIQ 4146
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 0.93
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Frame = +3
Query: 219 NMAPLSPTPCAE--ISDDELVSISVRDLN-------RQLKMRGLTRDQIVRMKQRRRTLK 371
N P P P E + + + I +R L QLK RG TR+QI + R+
Sbjct: 380 NFLPSGPVPANEPMLKRESVDLIKIRQLAILFQQRASQLKARGATREQITEILNRQAIAA 439
Query: 372 NRGYAASCRIKRIEQKDELENEKSQEWHDME 464
A + R +L+ + Q+ M+
Sbjct: 440 GTDLATVMTVARNLHFQQLQMRQQQQQQQMK 470
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/87 (18%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +3
Query: 276 SISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWH 455
++ + + ++K +DQ+V + +N + +I +EQ+ + N +++E
Sbjct: 34 AVFISAIKTKVKDINALKDQLVLQEVNHEHKEN---VLTKKINFLEQQLQSSNNQAEESR 90
Query: 456 DM-ELMQDENNRIREEIEALRSKYDAL 533
++ ++++EN ++ +E ++DAL
Sbjct: 91 NLISVLRNENESLKTNLENQNKRFDAL 117
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +3
Query: 282 SVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDM 461
++ +LN + ++I + + + + Y R ++ +ELE++ S +
Sbjct: 821 AITELNEEFATSSEVDNKISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSV 880
Query: 462 ELMQDENNRIREE 500
E +QDE N I+E+
Sbjct: 881 EELQDEMNSIKED 893
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 252 EISDDELVSISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNR 377
E SDDE + IS++D +R K+R + +V Q R L+ +
Sbjct: 102 EDSDDERLMISLQDHSRLRKLRQYEDEDMVNGLQYARRLRTQ 143
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 2.8
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Frame = +3
Query: 300 RQLKMRGLTRDQIVRMKQRRRTLKNRGYAAS----CRIKRIEQKDE---LENEKSQEWHD 458
+Q ++ R++ + K+R + LK + A R +R+ +++E LE K +E D
Sbjct: 653 KQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLD 712
Query: 459 MELMQDENNRIREEIEALRSKYDALKRFATMKSIPLPGRT 578
E +E R RE +E + + R A + + P +T
Sbjct: 713 KE---EEERRRRELLEKESEEKERRLREAKIAAFFAPNQT 749
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 302 ATQNARPHSRSDCKNETTSPDSKKQRLCRLVPYQAY 409
ATQ A PH+ +++ S S + + +PYQ Y
Sbjct: 542 ATQAAMPHTMGPSAHDSASAPSPHMQSQQALPYQYY 577
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 369 KNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRSKYDALKRFAT 548
+NR A CR ++ + L+ + ++ E++ + + +REEI +L++ A K
Sbjct: 481 RNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREEIVSLKTLLIAHKDCPV 540
Query: 549 MKS 557
KS
Sbjct: 541 AKS 543
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 345 MKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRSK 521
MK+RR +NR A+ CR K+ LE + ++ +++REE+ L+++
Sbjct: 268 MKRRRFLERNRIAASKCRQKKKLWTQNLEKTAHIACEQSKALRILVSQLREEVICLKNQ 326
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 522 ICFSTLQSLPLFYYFRPASVPYRAIPDFSRSRVHLSVL 409
+C + LP FY +P S IP FS+S +H V+
Sbjct: 1125 VCILLYKGLPPFYRQKPGS-----IPAFSKSLLHRKVV 1157
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Frame = +3
Query: 315 RGLTRDQIVRMKQRRRTLKNRG--------YAASCRIKRIEQKDELENEKSQEWHDMELM 470
+GLT+D I + Q+ + ++N+G +A I R+ Q+ + E
Sbjct: 12 KGLTKDNIQSLYQQWQVMRNQGATEENNPEFAQISSILRMVQRAHYARMQQMRNQSSEFP 71
Query: 471 QDENNRIREEIEAL 512
EN +R++ + L
Sbjct: 72 DAENTNLRKQQDTL 85
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -3
Query: 587 NISSSAGQRNALHRRKTF*RIIFASQRFNLFPYSIIFVLHQFHIVPFLTFLVLEFIFL 414
+++S G+R HR + I F++ + ++ + FH+ P +TF F+ L
Sbjct: 379 SMASIIGKRFGKHRISKTNKSIEGVFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSL 436
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 8.7
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 411 EQKDELENEKSQEWHDMELMQDENN-RIREEIEALRSKYDALKRFATMKSIPLPGRTG 581
E+KDELE E+ E D+ + E N E++E + DA +++I L TG
Sbjct: 134 EEKDELEEERIAE--DIAQNEVEQNIDDVEDLEEVNDTLDANAESPQIETIHLTDATG 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,694
Number of Sequences: 5004
Number of extensions: 42292
Number of successful extensions: 168
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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